WilcoxSLHits: Retrieve list of mutation-specific synthetic lethal partners...
In cbg-ethz/slidr: Discovery of mutation-specific synthetic lethal partners from large pan-cancer perturbation screens
View source: R/sl_test_funcs.R
WilcoxSLHits R Documentation
Retrieve list of mutation-specific synthetic lethal partners based on Wilcoxon test
for each type of cancer
Description
Test based on Wilcoxon test to identify synthetic lethal (SL) partners
using viabilities.
Usage
WilcoxSLHits(canc_data)
Arguments
canc_data
Processed data object for a given cancer type
Value
a dataframe of driver gene with its corresponding SL partner, the p-value in WT samples,
p-value in mutated samples, and the corresponding value after scaling.
cbg-ethz/slidr documentation built on Feb. 8, 2023, 11:15 p.m.
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View source: R/sl_test_funcs.R
| WilcoxSLHits | R Documentation |
Retrieve list of mutation-specific synthetic lethal partners based on Wilcoxon test for each type of cancer
Description
Test based on Wilcoxon test to identify synthetic lethal (SL) partners using viabilities.
Usage
WilcoxSLHits(canc_data)
Arguments
canc_data |
Processed data object for a given cancer type |
Value
a dataframe of driver gene with its corresponding SL partner, the p-value in WT samples, p-value in mutated samples, and the corresponding value after scaling.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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