getExperimentSamplesAssayData: getExperimentSamplesAssayData - Gets assay data for an...

In ceparman/Core5.3: Core API fucntions

Description

getExperimentSamplesAssayData Gets experiment samples from experiment identified by experiment barcode. Does not retieve files attached as data. Use getExperimentSampleAssayFileData to retrieve assay data that is a file.

Usage

getExperimentSamplesAssayData(coreApi, assayType, experimentSamplebarcode,
  useVerbose = FALSE)

Arguments

coreApi	coreApi object with valid jsessionid
assayType	assay type to get
experimentSamplebarcode	experiment sample barcode of entity to get
useVerbose	TRUE or FALSE to indicate if verbose options should be used in http POST

Details

getExperimentSamplesAssayData Gets assay data for a experiment sample identified by barcode.

Value

returns a list $entity contains entity information, $response contains the entire http response

Author(s)

Craig Parman ngsAnalytics, ngsanalytics.com

Examples

## Not run: 
api<-CoreAPIV2::CoreAPI("PATH TO JSON FILE")
login<- CoreAPIV2::authBasic(api)
experiment<-  getExperimentSamplesAssayData (login$coreApi,"assayType","barcode")
CoreAPIV2:logOut(login$coreApi)

## End(Not run)

ceparman/Core5.3 documentation built on May 7, 2019, 8:16 a.m.