getExperimentSamplesIntermediateData: getExperimentSamplesIntermediateData - Gets intermediate data...

Description Usage Arguments Details Value Author(s) Examples

Description

getExperimentSamplesIntermediateData Gets raw data for a experiment sample identified by barcode.

Usage

1
2
getExperimentSamplesIntermediateData(coreApi, experimentType, assayType,
  dataName, experimentSamplebarcode, useVerbose = FALSE)

Arguments

coreApi

coreApi object with valid jsessionid

experimentType

experiment type for sample

assayType

assay type for sample

dataName

assay data name to retrive as configured in the assay.

experimentSamplebarcode

experiment sample barcode of entity to get

useVerbose

TRUE or FALSE to indicate if verbose options should be used in http call

Details

getExperimentSamplesIntermediateData Gets intermediate data for a experiment sample identified by barcode.

Value

returns a list $entity contains data frame with derived experiment sample barcodes concentration, and assay raw data. $response contains the entire http response

Author(s)

Craig Parman ngsAnalytics, ngsanalytics.com

Examples

1
2
3
4
5
6
7
8
## Not run: 
api<-CoreAPIV2::CoreAPI("PATH TO JSON FILE")
login<- CoreAPIV2::authBasic(api)
response<-  getExperimentSamplesIntermediateData(login$coreApi,"ExperimentType","assayType","dataName","barcode")
rawdata <- response$entity
CoreAPIV2:logOut(login$coreApi)

## End(Not run)

ceparman/Core5.3 documentation built on May 7, 2019, 8:16 a.m.