getExperimentSamplesAssayFileData: getExperimentSamplesAssayFileData - Gets file attached as...

In ceparman/Core5.3: Core API fucntions

Description

getExperimentSamplesAssayFileData Gets file attached as assay data. Use getExperimentSamplesAssayData for non-file data.

Usage

getExperimentSamplesAssayFileData(coreApi, assayType, experimentSamplebarcode,
  attributeName, useVerbose = FALSE)

Arguments

coreApi	coreApi object with valid jsessionid
assayType	assay type to get
experimentSamplebarcode	experiment sample barcode of entity to get
useVerbose	TRUE or FALSE to indicate if verbose options should be used in http POST
attrributeName	Name of the attibute that containts the file data

Details

getExperimentSamplesAssayFileData Gets file attached as assay data.

Value

returns a list $entity containsbinary object that in the file, $response contains the entire http response

Author(s)

Craig Parman ngsAnalytics, ngsanalytics.com

Examples

## Not run: 
api<-CoreAPIV2::CoreAPI("PATH TO JSON FILE")
login<- CoreAPIV2::authBasic(api)
response<-  getExperimentSamplesAssayFileData(login$coreApi,"assayType","barcode","CI_FILE")
writeBin(response$entity, "myfile.png")
CoreAPIV2:logOut(login$coreApi)

## End(Not run)

ceparman/Core5.3 documentation built on May 7, 2019, 8:16 a.m.