Files in chandlerzuo/mbasic
Matrix Based Analysis for State-space Inference and Clustering.

DESCRIPTION
NAMESPACE
R/DataStructures.R R/InputDataProcessor.R R/MBASIC.R R/MBASIC_MADBayes.R R/MBASIC_binary.R R/MBASIC_pipeline.R R/MBASIC_simulate.R R/MBASIC_state.R R/generateSyntheticData.R R/utility.R R/visualize.R README.md
Read-and-delete-me
man/ChIPInputMatch.Rd man/MBASIC.MADBayes.Rd man/MBASIC.MADBayes.full.Rd man/MBASIC.Rd man/MBASIC.binary.Rd man/MBASIC.binary.all.Rd man/MBASIC.full.Rd man/MBASIC.pipeline.Rd man/MBASIC.sim.Rd man/MBASIC.sim.binary.Rd man/MBASIC.sim.state.Rd man/MBASIC.state.Rd man/MBASICFit-class.Rd man/averageMGC.Rd man/bkng_mean.Rd man/generateReadMatrices.Rd man/generateSyntheticData.Rd man/plot-methods.Rd man/readReads.Rd man/write.out.Rd
src/Makevars
src/Makevars.win
src/avg_score.cpp
src/avg_score.h
src/e_step.cpp
src/e_step.h
src/e_step_mix.cpp
src/e_step_mix.h
src/e_step_theta.cpp
src/e_step_theta.h
src/hamming.cpp
src/hamming.h
src/loglik.cpp
src/loglik.h
src/loglik_mix.cpp
src/loglik_mix.h
src/loglik_theta.cpp
src/loglik_theta.h
src/madbayes.cpp
src/mcmc.cpp
src/mcmc.h
src/silhouette.cpp
src/silhouette.h
src/symbols.rds
tests/test.R
vignettes/.__afs3B9C
vignettes/.__afs6617
vignettes/.__afs8764
vignettes/.__afs9133
vignettes/cache/__packages
vignettes/cache/unnamed-chunk-10_3f4f5b789bec219113b2f5e00e2c079d.RData
vignettes/cache/unnamed-chunk-10_3f4f5b789bec219113b2f5e00e2c079d.rdb
vignettes/cache/unnamed-chunk-10_3f4f5b789bec219113b2f5e00e2c079d.rdx
vignettes/cache/unnamed-chunk-10_8b16932a9a2e3ad40e051a1a9c7f26b1.RData
vignettes/cache/unnamed-chunk-10_8b16932a9a2e3ad40e051a1a9c7f26b1.rdb
vignettes/cache/unnamed-chunk-10_8b16932a9a2e3ad40e051a1a9c7f26b1.rdx
vignettes/cache/unnamed-chunk-11_c3db520123bc955bb31122eb65c5fcf8.RData
vignettes/cache/unnamed-chunk-11_c3db520123bc955bb31122eb65c5fcf8.rdb
vignettes/cache/unnamed-chunk-11_c3db520123bc955bb31122eb65c5fcf8.rdx
vignettes/cache/unnamed-chunk-4_a72216a4ab71d1583647f9e6aac50c66.RData
vignettes/cache/unnamed-chunk-4_a72216a4ab71d1583647f9e6aac50c66.rdb
vignettes/cache/unnamed-chunk-4_a72216a4ab71d1583647f9e6aac50c66.rdx
vignettes/cache/unnamed-chunk-5_366e832f965e877b21edc76cbd49a3cb.RData
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vignettes/cache/unnamed-chunk-7_d8e8746b4a448024991e09c3807cfab4.RData
vignettes/cache/unnamed-chunk-7_d8e8746b4a448024991e09c3807cfab4.rdb
vignettes/cache/unnamed-chunk-7_d8e8746b4a448024991e09c3807cfab4.rdx
vignettes/cache/unnamed-chunk-7_fafbc40c57b6a53005901eb1978e2cff.RData
vignettes/cache/unnamed-chunk-7_fafbc40c57b6a53005901eb1978e2cff.rdb
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vignettes/cache/unnamed-chunk-8_ab84c12e52b5a448a47f1a96806d4887.RData
vignettes/cache/unnamed-chunk-8_ab84c12e52b5a448a47f1a96806d4887.rdb
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vignettes/cache/unnamed-chunk-8_de1332df6f76c7b8699dcdd7406bac15.RData
vignettes/cache/unnamed-chunk-8_de1332df6f76c7b8699dcdd7406bac15.rdb
vignettes/cache/unnamed-chunk-8_de1332df6f76c7b8699dcdd7406bac15.rdx
vignettes/cache/unnamed-chunk-9_13a65808808639d56c77dc5ab57036a2.RData
vignettes/cache/unnamed-chunk-9_13a65808808639d56c77dc5ab57036a2.rdb
vignettes/cache/unnamed-chunk-9_13a65808808639d56c77dc5ab57036a2.rdx
vignettes/cache/unnamed-chunk-9_d086a5a41a5082e928af3446f4196055.RData
vignettes/cache/unnamed-chunk-9_d086a5a41a5082e928af3446f4196055.rdb
vignettes/cache/unnamed-chunk-9_d086a5a41a5082e928af3446f4196055.rdx
vignettes/mbasic.R
vignettes/mbasic.bib
vignettes/mbasic.pdf
vignettes/mbasic.rnw
vignettes/mbasic.tex
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac1CtrlAlnRep1.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac1CtrlAlnRep2.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac1CtrlAlnRep3.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac2CtrlAlnRep1.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac2CtrlAlnRep2.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac2CtrlAlnRep3.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac3CtrlAlnRep1.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac3CtrlAlnRep2.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac3CtrlAlnRep3.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac4CtrlAlnRep1.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac4CtrlAlnRep2.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac4CtrlAlnRep3.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac5CtrlAlnRep1.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac5CtrlAlnRep2.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac5CtrlAlnRep3.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac1CtrlAlnRep1.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac1CtrlAlnRep2.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac1CtrlAlnRep3.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac2CtrlAlnRep1.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac2CtrlAlnRep2.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac2CtrlAlnRep3.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac3CtrlAlnRep1.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac3CtrlAlnRep2.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac3CtrlAlnRep3.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac4CtrlAlnRep1.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac4CtrlAlnRep2.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac4CtrlAlnRep3.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac5CtrlAlnRep1.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac5CtrlAlnRep2.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac5CtrlAlnRep3.bed
vignettes/syntheticData/input/wgEncodeLabExpCell1InputCtrlAlnRep1.bed
vignettes/syntheticData/input/wgEncodeLabExpCell1InputCtrlAlnRep2.bed
vignettes/syntheticData/input/wgEncodeLabExpCell1InputCtrlAlnRep3.bed
vignettes/syntheticData/input/wgEncodeLabExpCell2InputCtrlAlnRep1.bed
vignettes/syntheticData/input/wgEncodeLabExpCell2InputCtrlAlnRep2.bed
vignettes/syntheticData/input/wgEncodeLabExpCell2InputCtrlAlnRep3.bed
vignettes/syntheticData/mgc/chr1_GC.txt
vignettes/syntheticData/mgc/chr1_M.txt
vignettes/syntheticData/mgc/chr2_GC.txt
vignettes/syntheticData/mgc/chr2_M.txt
vignettes/syntheticData/mgc/chr3_GC.txt
vignettes/syntheticData/mgc/chr3_M.txt
vignettes/syntheticData/mgc/chr4_GC.txt
vignettes/syntheticData/mgc/chr4_M.txt
vignettes/syntheticData/mgc/chr5_GC.txt
vignettes/syntheticData/mgc/chr5_M.txt
chandlerzuo/mbasic documentation built on May 12, 2017, 2:16 a.m.