Files in chandlerzuo/mbasic
Matrix Based Analysis for State-space Inference and Clustering.
DESCRIPTION
NAMESPACE
R/DataStructures.R
R/InputDataProcessor.R
R/MBASIC.R
R/MBASIC_MADBayes.R
R/MBASIC_binary.R
R/MBASIC_pipeline.R
R/MBASIC_simulate.R
R/MBASIC_state.R
R/generateSyntheticData.R
R/utility.R
R/visualize.R
README.md
Read-and-delete-me
man/ChIPInputMatch.Rd
man/MBASIC.MADBayes.Rd
man/MBASIC.MADBayes.full.Rd
man/MBASIC.Rd
man/MBASIC.binary.Rd
man/MBASIC.binary.all.Rd
man/MBASIC.full.Rd
man/MBASIC.pipeline.Rd
man/MBASIC.sim.Rd
man/MBASIC.sim.binary.Rd
man/MBASIC.sim.state.Rd
man/MBASIC.state.Rd
man/MBASICFit-class.Rd
man/averageMGC.Rd
man/bkng_mean.Rd
man/generateReadMatrices.Rd
man/generateSyntheticData.Rd
man/plot-methods.Rd
man/readReads.Rd
man/write.out.Rd
src/Makevars
src/Makevars.win
src/avg_score.cpp
src/avg_score.h
src/e_step.cpp
src/e_step.h
src/e_step_mix.cpp
src/e_step_mix.h
src/e_step_theta.cpp
src/e_step_theta.h
src/hamming.cpp
src/hamming.h
src/loglik.cpp
src/loglik.h
src/loglik_mix.cpp
src/loglik_mix.h
src/loglik_theta.cpp
src/loglik_theta.h
src/madbayes.cpp
src/mcmc.cpp
src/mcmc.h
src/silhouette.cpp
src/silhouette.h
src/symbols.rds
tests/test.R
vignettes/.__afs3B9C
vignettes/.__afs6617
vignettes/.__afs8764
vignettes/.__afs9133
vignettes/cache/__packages
vignettes/cache/unnamed-chunk-10_3f4f5b789bec219113b2f5e00e2c079d.RData
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vignettes/mbasic.R
vignettes/mbasic.bib
vignettes/mbasic.pdf
vignettes/mbasic.rnw
vignettes/mbasic.tex
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac1CtrlAlnRep1.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac1CtrlAlnRep2.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac1CtrlAlnRep3.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac2CtrlAlnRep1.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac2CtrlAlnRep2.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac2CtrlAlnRep3.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac3CtrlAlnRep1.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac3CtrlAlnRep2.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac3CtrlAlnRep3.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac4CtrlAlnRep1.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac4CtrlAlnRep2.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac4CtrlAlnRep3.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac5CtrlAlnRep1.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac5CtrlAlnRep2.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell1Fac5CtrlAlnRep3.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac1CtrlAlnRep1.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac1CtrlAlnRep2.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac1CtrlAlnRep3.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac2CtrlAlnRep1.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac2CtrlAlnRep2.bed
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vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac5CtrlAlnRep2.bed
vignettes/syntheticData/chip/wgEncodeLabExpCell2Fac5CtrlAlnRep3.bed
vignettes/syntheticData/input/wgEncodeLabExpCell1InputCtrlAlnRep1.bed
vignettes/syntheticData/input/wgEncodeLabExpCell1InputCtrlAlnRep2.bed
vignettes/syntheticData/input/wgEncodeLabExpCell1InputCtrlAlnRep3.bed
vignettes/syntheticData/input/wgEncodeLabExpCell2InputCtrlAlnRep1.bed
vignettes/syntheticData/input/wgEncodeLabExpCell2InputCtrlAlnRep2.bed
vignettes/syntheticData/input/wgEncodeLabExpCell2InputCtrlAlnRep3.bed
vignettes/syntheticData/mgc/chr1_GC.txt
vignettes/syntheticData/mgc/chr1_M.txt
vignettes/syntheticData/mgc/chr2_GC.txt
vignettes/syntheticData/mgc/chr2_M.txt
vignettes/syntheticData/mgc/chr3_GC.txt
vignettes/syntheticData/mgc/chr3_M.txt
vignettes/syntheticData/mgc/chr4_GC.txt
vignettes/syntheticData/mgc/chr4_M.txt
vignettes/syntheticData/mgc/chr5_GC.txt
vignettes/syntheticData/mgc/chr5_M.txt
