bkng_mean: Compute the background means.
In chandlerzuo/mbasic: Matrix Based Analysis for State-space Inference and Clustering.
Description
Usage
Arguments
Value
Author(s)
Description
Compute the background means.
Usage
1
Arguments
inputdat
A matrix for the input counts at each locus (column) for each experiment (row).
target
A RangedData object with two fiels named "mappability" and "GC".The length of target must be the same as the column of inputdat.
nknots
A integer for the number of knots for the spline function. Default: 2.
family
A string for the distributional family. Must be either "lognormal" (default) or "negbin".
Value
A numeric matrix for the background counts at each locus (column) for each experiment (row).
Author(s)
Chandler Zuo zuo@stat.wisc.edu
chandlerzuo/mbasic documentation built on May 13, 2019, 3:24 p.m.
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Description Usage Arguments Value Author(s)
Description
Compute the background means.
Usage
1 |
Arguments
inputdat |
A matrix for the input counts at each locus (column) for each experiment (row). |
target |
A RangedData object with two fiels named "mappability" and "GC".The length of target must be the same as the column of inputdat. |
nknots |
A integer for the number of knots for the spline function. Default: 2. |
family |
A string for the distributional family. Must be either "lognormal" (default) or "negbin". |
Value
A numeric matrix for the background counts at each locus (column) for each experiment (row).
Author(s)
Chandler Zuo zuo@stat.wisc.edu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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