plot-methods: Plot the state probability for a fitted MBASIC model.

In chandlerzuo/mbasic: Matrix Based Analysis for State-space Inference and Clustering.

Description

Plot the state probability for a fitted MBASIC model.

Usage

## S4 method for signature 'MBASICFit,missing'
plot(x, y = numeric(0), state = 1,
  slot = "Theta", xlab = NULL, ylab = NULL, main = NULL, Rowv = FALSE,
  Colv = FALSE, trace = "none", dendrogram = "none", ...)

Arguments

x	An MBASICFit object.
y	Missing.
state	The probability for this state is plotted.
slot	The slot to be plotted, "Theta" (default), "W", "Mu", or "Sigma".
xlab	The x-axis label.
ylab	The y-axis label.
main	The title.
Rowv,Colv,trace,dendrogram,...	Other arguments passed to heatmap.2.
...	Other arguments passed to the function heatmap.2.

Details

This function provides four differerent kinds of plots.
If slot='Theta', a heatmap for the probability for each unit to have state state under each condition is drawn.
If slot='W', a heatmap for the probability for each cluster to have state state under each condition is drawn.
If slot='Mu' or 'Sigma', the range of the fitted 'Mu' or 'Sigma' parameters among different replicates for the same condition is drawn.

Value

A heatmap showing the probability for a given state.

Author(s)

Chander Zuo [e-mail]

chandlerzuo/mbasic documentation built on May 13, 2019, 3:24 p.m.