Description Usage Arguments Value Author(s) Examples
This function generates three set of files. ChIP BED files are stored in 'chip/', input BED files are stored in 'input/', mappability and GC files are stored in 'mgc/'. All BED files follow the name convention for the ENCODE consortium. Each chromosome has a size of 10K, and each locus has 20 bp. ChIP data for two celllines, each with K transcription factors, are generated. All ChIP experiments with the same celltype have the same matching input. Each ChIP experiment has randomly 1-3 replicates. Each input has 3 replicates.
1 | generateSyntheticData(dir, nchr = 5, K = 5, I = 100, J = 3)
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dir |
The directory for the generated datasets. If this directory already exists, it will be removed before being recreated. |
nchr |
The number of chromosomes. Default: 5. |
K |
The number of different transcription factors. Default: 5. |
I |
The number of loci. Default: 100. |
J |
The number of clusters among the loci. Default: 3. |
A RangedData object.
Chandler Zuo zuo@stat.wisc.edu
1 | ## Not run: generateSyntheticData("tmpData/", nchr = 5, K = 5, I = 100, J = 3)
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