Files in charlotte-ngs/lbgfs2020

Livestock Breeding and Genomics (Fall 2020)

NEWS.md R/deploy_material.R R/hello.R README.Rmd README.md cn/00_preface.Rmd cn/01_intro_lbg.Rmd cn/02_basics_qg.Rmd cn/03_gen_eval.Rmd cn/04-blup.Rmd cn/05-gencov.Rmd cn/06-variance-inbreeding.Rmd cn/07-add-asp-blup.Rmd cn/08-multiple-trait.Rmd cn/09-genomic-selection.Rmd cn/10-var-comp.Rmd cn/11_gwas.Rmd cn/A1_intro_linalg.Rmd cn/A2_intro_rstats.Rmd cn/_bookdown_files/lbgfs2019-cn_files/figure-latex/hist-clt-1.pdf cn/_bookdown_files/lbgfs2020-cn_files/figure-latex/hist-clt-1.pdf cn/_bookdown_files/lbgfs2020-cn_files/figure-latex/milkproteinperformanceplot-1.pdf cn/genotypicvalue.pdf cn/index.Rmd cn/odg/animalcov.pdf cn/odg/basicmodelrearrterm.pdf cn/odg/confintfig.pdf cn/odg/conserved-marker-segment.pdf cn/odg/coordinate-system.pdf cn/odg/genotypicvalue.pdf cn/odg/ibdibs.pdf cn/odg/ideal-pop.pdf cn/odg/idealpopsingletrait.pdf cn/odg/milkcompperf.pdf cn/odg/moorelaw.pdf cn/odg/regbreedingvaluesinglerecord.pdf cn/odg/snpdistribution.pdf cn/odg/vector-cs-perspecitve.pdf cn/odg/vector-physics-perspective.pdf cn/odg/vector-scalar-multiplication.pdf cn/odg/vector-sum.pdf docs/cn/00_preface.pdf docs/cn/01_intro_lbg.pdf docs/cn/02_intro_qg.pdf docs/cn/03_gen_eval.pdf docs/cn/04_blup.pdf docs/cn/05_gencov.pdf docs/cn/06_variance_inbreeding.pdf docs/cn/07_add_asp_blup.pdf docs/cn/08_multiple_trait.pdf docs/cn/09_gen_sel.pdf docs/cn/10_var_comp.pdf docs/cn/11_gwas.pdf docs/cn/A1_intro_linalg.pdf docs/cn/A2_intro_rstats.pdf docs/cn/lbgfs2020-cn.pdf docs/ex/lbgfs2020_test_exam.pdf docs/ex/lbgfs2020_w02_ex01_linalg.pdf docs/ex/lbgfs2020_w03_ex02.pdf docs/ex/lbgfs2020_w04_ex03.pdf docs/ex/lbgfs2020_w05_ex04.pdf docs/ex/lbgfs2020_w06_ex05.pdf docs/ex/lbgfs2020_w07_ex06.pdf docs/ex/lbgfs2020_w08_ex07.pdf docs/ex/lbgfs2020_w09_ex08.pdf docs/ex/lbgfs2020_w10_ex09.pdf docs/ex/lbgfs2020_w11_ex10.pdf docs/ex/lbgfs2020_w12_ex11.pdf docs/misc/20200918_ohp_lecture01.pdf docs/misc/20200918_students_questionnaire.pdf docs/misc/20200925_ohp_lecture_02.pdf docs/misc/20201002_ohp_lecture_03.pdf docs/misc/20201016_ohp_lecture_05.pdf docs/misc/20201023_ohp_lecture_06.pdf docs/misc/lbgfs2020_slides_w04_blup_with_notes.pdf docs/nb/20201030_nm_inv_inb_nb.pdf docs/nb/20201106_mme_setup.Rmd docs/nb/20201204_nb_vc.Rmd docs/sl/20200925_intro_rmarkdown.pdf docs/sl/asm-w04-v04-gblup.pdf docs/sl/asm-w04-v04-grm.pdf docs/sl/lbgfs2019_slides_additional_aspects.pdf docs/sl/lbgfs2020_slides_gencov.pdf docs/sl/lbgfs2020_slides_geno_sel.pdf docs/sl/lbgfs2020_slides_gwas.pdf docs/sl/lbgfs2020_slides_inbreeding.pdf docs/sl/lbgfs2020_slides_invnumrelmat.pdf docs/sl/lbgfs2020_slides_multiple_traits.pdf docs/sl/lbgfs2020_slides_numrelmat.pdf docs/sl/lbgfs2020_slides_selection-index.pdf docs/sl/lbgfs2020_slides_var_comp.pdf docs/sl/lbgfs2020_slides_var_inb.pdf docs/sl/lbgfs2020_slides_w01_intro_lbg.pdf docs/sl/lbgfs2020_slides_w02_basics_qg.pdf docs/sl/lbgfs2020_slides_w03_gen-eval.pdf docs/sl/lbgfs2020_slides_w04_blup.pdf docs/sol/lbgfs2020_test_exmsol.pdf docs/sol/lbgfs2020_w02_sol01_linalg.pdf docs/sol/lbgfs2020_w03_sol02.pdf docs/sol/lbgfs2020_w04_sol03.pdf docs/sol/lbgfs2020_w05_sol04.pdf docs/sol/lbgfs2020_w06_sol05.pdf docs/sol/lbgfs2020_w07_sol06.pdf docs/sol/lbgfs2020_w08_sol07.pdf docs/sol/lbgfs2020_w09_sol08.pdf docs/sol/lbgfs2020_w10_sol09.pdf docs/sol/lbgfs2020_w11_sol10.pdf docs/sol/lbgfs2020_w12_sol11.pdf ex/w02_linalg/lbgfs2020_w02_ex01_linalg.Rmd ex/w03_qg/lbgfs2020_w03_ex02.Rmd ex/w04_bv/lbgfs2020_w04_ex03.Rmd ex/w05_pbvacc/lbgfs2020_w05_ex04.Rmd ex/w06_sm/lbgfs2020_w06_ex05.Rmd ex/w07_nm/lbgfs2020_w07_ex06.Rmd ex/w08_vi/lbgfs2020_w08_ex07.Rmd ex/w09_acde/lbgfs2020_w09_ex08.Rmd ex/w10_mt/lbgfs2020_w10_ex09.Rmd ex/w11_mem/lbgfs2020_w11_ex10.Rmd ex/w12_vcomp/lbgfs2020_w12_ex11.Rmd ex/w13_te/lbgfs2020_test_exam.Rmd ex/w13_te/odg/fig-sub-pop.pdf ex/w13_te/odg/prob2a-ped-show.pdf man/hello.Rd misc/20200918_exercise_platform/20200918_exercise_platform.Rmd misc/20200918_ohp_lecture_01/20200918_ohp_lecture_01.Rmd misc/20200918_ohp_lecture_01/odg/ohp-01.pdf misc/20200918_ohp_lecture_01/odg/ohp-02.pdf misc/20200918_ohp_lecture_01/odg/ohp-03.pdf misc/20200918_ohp_lecture_01/odg/ohp-04.pdf misc/20200918_ohp_lecture_01/odg/ohp-05.pdf misc/20200918_ohp_lecture_01/odg/ohp-06.pdf misc/20200918_ohp_lecture_01/odg/ohp-07.pdf misc/20200918_ohp_lecture_01/odg/ohp-08.pdf misc/20200918_questionnaire/20200918_students_questionnaire.Rmd misc/20200918_questionnaire/odg/vector-physics-perspective.pdf misc/20200925_intro_rmarkdown/20200925_intro_rmarkdown.Rmd misc/20200925_intro_rmarkdown/20200925_intro_rmarkdown.pdf misc/20200925_intro_rmarkdown/odg/rmd-openfile.pdf misc/20200925_intro_rmarkdown/odg/rmd-syntax.pdf misc/20200925_intro_rmarkdown/odg/rmd-syntax2.pdf misc/20200925_intro_rmarkdown/odg/rmd-workflow.pdf misc/20200925_ohp_lecture_02/20200925_ohp_lecture_02.Rmd misc/20200925_ohp_lecture_02/odg/bvI.pdf misc/20200925_ohp_lecture_02/odg/bvII.pdf misc/20200925_ohp_lecture_02/odg/bvIII.pdf misc/20200925_ohp_lecture_02/odg/frequencies.pdf misc/20200925_ohp_lecture_02/odg/genetic-model.pdf misc/20200925_ohp_lecture_02/odg/hwe.pdf misc/20200925_ohp_lecture_02/odg/hweII.pdf misc/20200925_ohp_lecture_02/odg/loc-no-assoc.pdf misc/20200925_ohp_lecture_02/odg/loc-with-assoc.pdf misc/20200925_ohp_lecture_02/odg/pop-mean.pdf misc/20200925_ohp_lecture_02/odg/single-locus.pdf misc/20201002_ohp_lecture_03/20201002_ohp_lecture_03.Rmd misc/20201002_ohp_lecture_03/odg/img-1.pdf misc/20201002_ohp_lecture_03/odg/img-10.pdf misc/20201002_ohp_lecture_03/odg/img-11.pdf misc/20201002_ohp_lecture_03/odg/img-12.pdf misc/20201002_ohp_lecture_03/odg/img-13.pdf misc/20201002_ohp_lecture_03/odg/img-14.pdf misc/20201002_ohp_lecture_03/odg/img-15.pdf misc/20201002_ohp_lecture_03/odg/img-2.pdf misc/20201002_ohp_lecture_03/odg/img-3.pdf misc/20201002_ohp_lecture_03/odg/img-4.pdf misc/20201002_ohp_lecture_03/odg/img-5.pdf misc/20201002_ohp_lecture_03/odg/img-6.pdf misc/20201002_ohp_lecture_03/odg/img-7.pdf misc/20201002_ohp_lecture_03/odg/img-8.pdf misc/20201002_ohp_lecture_03/odg/img-9.pdf misc/20201016_ohp_lecture_05/20201016_ohp_lecture_05.Rmd misc/20201016_ohp_lecture_05/odg/odg_pic-1.pdf misc/20201016_ohp_lecture_05/odg/odg_pic-10.pdf misc/20201016_ohp_lecture_05/odg/odg_pic-11.pdf misc/20201016_ohp_lecture_05/odg/odg_pic-12.pdf misc/20201016_ohp_lecture_05/odg/odg_pic-13.pdf misc/20201016_ohp_lecture_05/odg/odg_pic-14.pdf misc/20201016_ohp_lecture_05/odg/odg_pic-2.pdf misc/20201016_ohp_lecture_05/odg/odg_pic-3.pdf misc/20201016_ohp_lecture_05/odg/odg_pic-4.pdf misc/20201016_ohp_lecture_05/odg/odg_pic-5.pdf misc/20201016_ohp_lecture_05/odg/odg_pic-6.pdf misc/20201016_ohp_lecture_05/odg/odg_pic-7.pdf misc/20201016_ohp_lecture_05/odg/odg_pic-8.pdf misc/20201016_ohp_lecture_05/odg/odg_pic-9.pdf misc/20201023_ohp_lecture_06/20201023_ohp_lecture_06.Rmd misc/20201023_ohp_lecture_06/odg/odg_pic-1.pdf misc/20201023_ohp_lecture_06/odg/odg_pic-10.pdf misc/20201023_ohp_lecture_06/odg/odg_pic-11.pdf misc/20201023_ohp_lecture_06/odg/odg_pic-12.pdf misc/20201023_ohp_lecture_06/odg/odg_pic-2.pdf misc/20201023_ohp_lecture_06/odg/odg_pic-3.pdf misc/20201023_ohp_lecture_06/odg/odg_pic-4.pdf misc/20201023_ohp_lecture_06/odg/odg_pic-5.pdf misc/20201023_ohp_lecture_06/odg/odg_pic-6.pdf misc/20201023_ohp_lecture_06/odg/odg_pic-7.pdf misc/20201023_ohp_lecture_06/odg/odg_pic-8.pdf misc/20201023_ohp_lecture_06/odg/odg_pic-9.pdf misc/20201030_nm_inv_inb/20201030_nm_inv_inb_nb.Rmd misc/20201127_msc_thesis_topics/MasterThesisTopics_HS2020.Rmd misc/20201127_msc_thesis_topics/MasterThesisTopics_HS2020.pdf nb/20201120_kron_prod/20201120_kronecker_product.Rmd nb/20201211_mt_blup/20201211_mt_blup.Rmd nb/20201211_mt_blup/odg/rel-comp.pdf rmdexam/R/anova.R rmdexam/R/demo-rmd.R rmdexam/R/gnm.R rmdexam/R/nrm.R rmdexam/R/pbv.R rmdexam/R/vinb.R rmdexam/rmd/anova.Rmd rmdexam/rmd/gnm.Rmd rmdexam/rmd/index.Rmd rmdexam/rmd/nrm.Rmd rmdexam/rmd/pbv.Rmd 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sl/w07_ainv_inb/lbgfs2020_slides_inbreeding.Rmd sl/w08_var_inb/lbgfs2020_slides_var_inb.Rmd sl/w08_var_inb/lbgfs2020_slides_var_inb.pdf sl/w08_var_inb/odg/ideal-pop.pdf sl/w09_spec_asp_blup/lbgfs2019_slides_additional_aspects.Rmd sl/w09_spec_asp_blup/odg/confintfig.pdf sl/w10_mt_si/lbgfs2020_slides_multiple_traits.Rmd sl/w10_mt_si/lbgfs2020_slides_selection-index.Rmd sl/w10_mt_si/odg/aggregategenotype.pdf sl/w10_mt_si/odg/changeinprofit.pdf sl/w10_mt_si/odg/desiredscenario.pdf sl/w10_mt_si/odg/selectionmethod.pdf sl/w11_gs/lbgfs2020_slides_geno_sel.Rmd sl/w11_gs/odg/fig-benefit-geno-sel-cattle.pdf sl/w11_gs/odg/fig-benefit-geno-sel-pig.pdf sl/w11_gs/odg/fig-polygenic-model.pdf sl/w11_gs/odg/mem-vs-bvm.pdf sl/w11_gs/odg/two-step-gs.pdf sl/w12_gwas/lbgfs2020_slides_gwas.Rmd sl/w12_gwas/odg/conserved-marker-segment.pdf sl/w12_vce/lbgfs2020_slides_var_comp.Rmd sol/w02_linalg/lbgfs2020_w02_sol01_linalg.Rmd sol/w03_qg/lbgfs2020_w03_sol02.Rmd sol/w04_bv/lbgfs2020_w04_sol03.Rmd sol/w05_pbvacc/lbgfs2020_w05_sol04.Rmd sol/w06_sm/lbgfs2020_w06_sol05.Rmd sol/w07_nm/lbgfs2020_w07_sol06.Rmd sol/w08_vi/lbgfs2020_w08_sol07.Rmd sol/w09_acde/lbgfs2020_w09_sol08.Rmd sol/w09_acde/lbgfs2020_w09_sol08.pdf sol/w10_mt/lbgfs2020_w10_sol09.Rmd sol/w11_mem/lbgfs2020_w11_sol10.Rmd sol/w12_vcomp/lbgfs2020_w12_sol11.Rmd sol/w13_te/lbgfs2020_test_exmsol.Rmd sol/w13_te/odg/fig-sub-pop.pdf sol/w13_te/odg/prob2a-ped-show.pdf students/20201210_question_cn.R vignettes/course_additional_material.Rmd vignettes/course_exercises.Rmd vignettes/course_notes.Rmd vignettes/course_solutions.Rmd