API for chasemc/ghosts
Protein and small molecule analysis of bacteria by MALDI-TOF MS
| Global functions | |
|---|---|
| .calculateMatches | Man page |
| .clust | Man page |
| .grepAcquDoubleValue | Man page |
| .grepAcquValue | Man page |
| .resample | Man page |
| .sampleName | Man page |
| .text.coord.hclust | Man page |
| MAN_Server | Man page |
| addAttribs | Man page |
| addClass | Man page |
| addDotsActionUI | Man page |
| app_server | Man page |
| app_ui | Man page |
| as.binary.matrix.hclust | Man page |
| availableSampleNames | Man page |
| baserMirrorPlot | Man page |
| bootlabels.hclust | Man page |
| bootstrap | Man page |
| brukerToMzml_popup | Man page |
| bsCollapse | Man page |
| bsCollapsePanel | Man page |
| changeDendPartColor | Man page |
| changeDendPartSize | Man page |
| chartoRawtoCompressed | Man page |
| choose_dir | Man page |
| chooserInput | Man page |
| cleanWSpace | Man page |
| collapseReplicates | Man page |
| colorBlindPalette | Man page |
| colorMANBy_UI | Man page |
| colorPicker | Man page |
| colordendLabelsUI | Man page |
| colordendLinesUI | Man page |
| colored_dots | Man page |
| compress | Man page |
| convertDataTab_Server | Man page |
| convertDataTab_UI | Man page |
| convertDelim_Server | Man page |
| convertDelim_UI | Man page |
| convertMZ_Server | Man page |
| convertMZ_UI | Man page |
| convertMicrotyper_Server | Man page |
| convertMicrotyper_UI | Man page |
| convertOneBruker_Server | Man page |
| convertOneBruker_UI | Man page |
| copyDB_dbAttach | Man page |
| copyDB_setupMeta | Man page |
| copyToNewDatabase | Man page |
| copyingDbPopup | Man page |
| createMetaSQL | Man page |
| createNewSQLITEdb | Man page |
| createPool | Man page |
| createSpectraSQL | Man page |
| createXMLSQL | Man page |
| databaseSelector_UI | Man page |
| databaseSelector_server | Man page |
| databaseTabServer | Man page |
| databaseTabUI | Man page |
| databaseTabUIFunc | Man page |
| decompress | Man page |
| dendDotsServer | Man page |
| dendDotsUI | Man page |
| dendrogramCreator | Man page |
| dendrogramCreatorUI | Man page |
| deserial | Man page |
| displayMissingProteinUI | Man page |
| distMatrix | Man page |
| downloadHier | Man page |
| downloadSmNet_UI | Man page |
| downloadSvg | Man page |
| dropNulls | Man page |
| experimentSummary_Server | Man page |
| experimentSummary_UI | Man page |
| exportSamples_server | Man page |
| exportSamples_ui | Man page |
| exportmzML | Man page |
| extractHPCConstants | Man page |
| findMSconvert | Man page |
| findMissingSampleMapIds | Man page |
| findmz | Man page |
| getAllStrain_IDsfromSQL | Man page |
| getAttribs | Man page |
| getOS | Man page |
| getPeakData | Man page |
| getSmallMolSpectra | Man page |
| hashR | Man page |
| insertIntoIndividualSpectra | Man page |
| insertIntoMassTable | Man page |
| insertLocale | Man page |
| insertMetadataColumns | Man page |
| labelsFromBrushedDendrogram | Man page |
| mQuantToMassVec | Man page |
| manPageProtDend_Server | Man page |
| manPageProtDend_UI | Man page |
| map384Well | Man page |
| microtyperTomzML | Man page |
| mirrorPlot | Man page |
| mirrorPlotDownload_UI | Man page |
| mirrorPlotsSettings_UI | Man page |
| mirrorPlots_Server | Man page |
| mirrorPlots_UI | Man page |
| modDendDotsMod_WellPanel | Man page |
| modDendLabels_WellPanel | Man page |
| modDendLines_WellPanel | Man page |
| modularityClustering | Man page |
| mquantSpecFromSQL | Man page |
| multipleMaldiPlates | Man page |
| networkFromDF | Man page |
| nulledMap384Well | Man page |
| parseDelimitedMS | Man page |
| path_sanitize | Man page |
| pcaCalculation | Man page |
| pcoaCalculation | Man page |
| peakBinner | Man page |
| peakRetentionSettings_Server | Man page |
| peakRetentionSettings_UI | Man page |
| plateMapUI | Man page |
| platemod | Man page |
| plotHier | Man page |
| plotly_3d_scatter | Man page |
| popup3 | Man page |
| popup4 | Man page |
| popupPlotTsne_UI | Man page |
| popupPlotTsne_server | Man page |
| popupPlot_UI | Man page |
| popupPlot_server | Man page |
| processMZML | Man page |
| processProteinSpectra | Man page |
| processSmallMolSpectra | Man page |
| processXMLIndSpectra | Man page |
| proteinPeaksToMatrix | Man page |
| proteoWizConvert | Man page |
| readAcqusFile | Man page |
| readBrukerAcqus | Man page |
| runDendDots | Man page |
| run_app | Man page |
| sampMeta | Man page |
| sampMetaOutput | Man page |
| sampleChooser_UI | Man page |
| sampleChooser_server | Man page |
| sampleMapSaver | Man page |
| sampleMapViewer | Man page |
| saveNetSVG | Man page |
| selectDirectory_Server | Man page |
| selectDirectory_UI | Man page |
| selectInjections_UI | Man page |
| selectInjections_server | Man page |
| serial | Man page |
| serializeXML | Man page |
| smMANPlot_UI | Man page |
| smallMolDFtoNetwork | Man page |
| smallMolDendrogram_UI | Man page |
| smallmirrorPlotsSampleSelect_UI | Man page |
| smallmirrorPlots_Server | Man page |
| smallmirrorPlots_UI | Man page |
| spectraProcessingFunction | Man page |
| spectrumMatrixToMALDIqaunt | Man page |
| sqlCreate_version | Man page |
| sqlTableArchitecture | Man page |
| sql_CreateIndividualSpectra | Man page |
| sql_CreateVersionTable | Man page |
| sql_CreatelLocaleTable | Man page |
| sql_CreatemassTable | Man page |
| sql_CreatemetaData | Man page |
| sql_CreatexmlTable | Man page |
| startingFromMZ | Man page |
| subtractMatrixBlank | Man page |
| transferToNewDB_UI | Man page |
| transferToNewDB_server | Man page |
| tsneCalculation | Man page |
| tsneUiPop | Man page |
| ui_proteinClustering | Man page |
| ui_smallMolMan | Man page |
| updateCollapse | Man page |
| updateMeta_UI | Man page |
| updateMeta_server | Man page |
