API for chasemc/tempRepo
Protein and small molecule analysis of bacteria by MALDI-TOF MS
| Global functions | |
|---|---|
| .calculateMatches | Man page Source code |
| .clust | Man page Source code |
| .grepAcquDoubleValue | Man page Source code |
| .grepAcquValue | Man page Source code |
| .onLoad | Source code |
| .resample | Man page Source code |
| .sampleName | Man page Source code |
| .text.coord.hclust | Man page Source code |
| MAN_Server | Man page Source code |
| addAttribs | Man page Source code |
| addClass | Man page Source code |
| addDotsActionUI | Man page Source code |
| app_server | Man page Source code |
| app_ui | Man page Source code |
| as.binary.matrix.hclust | Man page Source code |
| availableSampleNames | Man page Source code |
| baserMirrorPlot | Man page Source code |
| bootlabels.hclust | Man page Source code |
| bootstrap | Man page Source code |
| brukerDataSpotsandPaths | Man page Source code |
| brukerToMzml_popup | Man page Source code |
| bsCollapse | Man page Source code |
| bsCollapsePanel | Man page Source code |
| changeDendPartColor | Man page Source code |
| changeDendPartSize | Man page Source code |
| chartoRawtoCompressed | Man page Source code |
| choose_dir | Man page Source code |
| chooserInput | Man page Source code |
| cleanWSpace | Man page Source code |
| collapseReplicates | Man page Source code |
| colorBlindPalette | Man page Source code |
| colorPicker | Man page Source code |
| colordendLabelsUI | Man page Source code |
| colordendLinesUI | Man page Source code |
| colored_dots | Man page |
| compress | Man page Source code |
| convertDataTab_Server | Man page Source code |
| convertDataTab_UI | Man page Source code |
| convertDelim_Server | Man page Source code |
| convertDelim_UI | Man page Source code |
| convertMZ_Server | Man page Source code |
| convertMZ_UI | Man page Source code |
| convertMicrotyper_Server | Man page Source code |
| convertMicrotyper_UI | Man page Source code |
| convertOneBruker_Server | Man page Source code |
| convertOneBruker_UI | Man page Source code |
| copyDB_dbAttach | Man page Source code |
| copyDB_setupMeta | Man page Source code |
| copyToNewDatabase | Man page Source code |
| copyingDbPopup | Man page Source code |
| createMetaSQL | Man page Source code |
| createNewSQLITEdb | Man page Source code |
| createPool | Man page Source code |
| createSpectraSQL | Man page Source code |
| createXMLSQL | Man page Source code |
| databaseSelector_UI | Man page Source code |
| databaseSelector_server | Man page Source code |
| databaseTabServer | Man page Source code |
| databaseTabUI | Man page Source code |
| databaseTabUIFunc | Man page Source code |
| decompress | Man page Source code |
| dendDotsServer | Man page Source code |
| dendDotsUI | Man page Source code |
| dendrogramCreator | Man page Source code |
| dendrogramCreatorUI | Man page Source code |
| deserial | Man page Source code |
| displayMissingProteinUI | Man page Source code |
| distMatrix | Man page Source code |
| downloadHier | Man page Source code |
| downloadSmNet_UI | Man page Source code |
| downloadSvg | Man page Source code |
| dropNulls | Man page Source code |
| experimentSummary_Server | Man page Source code |
| experimentSummary_UI | Man page Source code |
| exportSamples_server | Man page Source code |
| exportSamples_ui | Man page Source code |
| exportmzML | Man page Source code |
| extractHPCConstants | Man page Source code |
| findAcquisitionInfo | Man page Source code |
| findMSconvert | Man page Source code |
| findRawSHAandFile | Man page Source code |
| findmz | Man page Source code |
| getAllStrain_IDsfromSQL | Man page Source code |
| getAttribs | Man page Source code |
| getOS | Man page Source code |
| getPeakData | Man page Source code |
| getSmallMolSpectra | Man page Source code |
| hashR | Man page Source code |
| insertIntoIndividualSpectra | Man page Source code |
| insertIntoMassTable | Man page Source code |
| insertMetadataColumns | Man page Source code |
| labelsFromBrushedDendrogram | Man page Source code |
| mQuantToMassVec | Man page Source code |
| manPageProtDend_Server | Man page Source code |
| manPageProtDend_UI | Man page Source code |
| microtyperTomzML | Man page Source code |
| mirrorPlot | Man page Source code |
| mirrorPlotDownload_UI | Man page Source code |
| mirrorPlotsSettings_UI | Man page Source code |
| mirrorPlots_Server | Man page Source code |
| mirrorPlots_UI | Man page Source code |
| modDendDotsMod_WellPanel | Man page Source code |
| modDendLabels_WellPanel | Man page Source code |
| modDendLines_WellPanel | Man page Source code |
| mquantSpecFromSQL | Man page Source code |
| multipleMaldiPlates | Man page Source code |
| parseDelimitedMS | Man page Source code |
| path_sanitize | Man page Source code |
| pcaCalculation | Man page Source code |
| pcoaCalculation | Man page Source code |
| peakBinner | Man page Source code |
| peakRetentionSettings_Server | Man page Source code |
| peakRetentionSettings_UI | Man page Source code |
| plateMapUI | Man page Source code |
| platemod | Man page Source code |
| plotHier | Man page Source code |
| plotly_3d_scatter | Man page Source code |
| popup3 | Man page Source code |
| popup4 | Man page Source code |
| popupPlotTsne_UI | Man page Source code |
| popupPlotTsne_server | Man page Source code |
| popupPlot_UI | Man page Source code |
| popupPlot_server | Man page Source code |
| processMZML | Man page Source code |
| processProteinSpectra | Man page Source code |
| processSmallMolSpectra | Man page Source code |
| processXMLIndSpectra | Man page Source code |
| proteinPeaksToMatrix | Man page Source code |
| readAcquFile | Man page Source code |
| runDendDots | Man page Source code |
| run_app | Man page Source code |
| sampMeta | Man page Source code |
| sampMetaOutput | Man page Source code |
| sampleChooser_UI | Man page Source code |
| sampleChooser_server | Man page Source code |
| selectDirectory_Server | Man page Source code |
| selectDirectory_UI | Man page Source code |
| selectInjections_UI | Man page Source code |
| selectInjections_server | Man page Source code |
| serial | Man page Source code |
| serializeXML | Man page Source code |
| smMANPlot_UI | Man page Source code |
| smallMolDFtoNetwork | Man page Source code |
| smallMolDendrogram_UI | Man page Source code |
| smallmirrorPlotsSampleSelect_UI | Man page Source code |
| smallmirrorPlots_Server | Man page Source code |
| smallmirrorPlots_UI | Man page Source code |
| spectraProcessingFunction | Man page Source code |
| spectrumMatrixToMALDIqaunt | Man page Source code |
| sqlCreate_version | Man page Source code |
| sqlTableArchitecture | Man page Source code |
| sql_CreateIndividualSpectra | Man page Source code |
| sql_CreateVersionTable | Man page Source code |
| sql_CreatemassTable | Man page Source code |
| sql_CreatemetaData | Man page Source code |
| sql_CreatexmlTable | Man page Source code |
| startingFromBrukerFlex | Man page Source code |
| startingFromMZ | Man page Source code |
| subtractMatrixBlank | Man page Source code |
| transferToNewDB_UI | Man page Source code |
| transferToNewDB_server | Man page Source code |
| tsneCalculation | Man page Source code |
| tsneUiPop | Man page Source code |
| ui_proteinClustering | Man page Source code |
| ui_smallMolMan | Man page Source code |
| updateCollapse | Man page Source code |
| updateMeta_UI | Man page Source code |
| updateMeta_server | Man page Source code |
