filter: Filter functions for Gene Selection

Description Usage Arguments Value References

Description

The functions listed above are usually not called by the user but via GeneSelection.

Usage

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ttest(X, y, learnind, ...)
welchtest(X, y, learnind, ...)
ftest(X, y, learnind,...)
kruskaltest(X, y, learnind,...)
limmatest(X, y, learnind,...)
golubcrit(X, y, learnind,...)
rfe(X, y, learnind,...)
shrinkcat(X,y,learnind,...)

Arguments

X

A numeric matrix of gene expression values.

y

A numeric vector of class labels.

learnind

An index vector specifying the observations that belong to the learning set.

...

Currently unused argument.

Value

An object of class varseloutput.

References

Slawski, M. Daumer, M. Boulesteix, A.-L. (2008) CMA - A comprehensive Bioconductor package for supervised classification with high dimensional data. BMC Bioinformatics 9: 439


chbernau/CMA documentation built on May 17, 2019, 12:04 p.m.