Files in chjackson/msm
Multi-State Markov and Hidden Markov Models in Continuous Time
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/recheck.yml
.github/workflows/rhub.yaml
.github/workflows/test-coverage.yaml
.gitignore
ChangeLog
DESCRIPTION
NAMESPACE
NEWS.md
R/MatrixExp.R
R/boot.R
R/constants.R
R/datasets_doc.R
R/deltamethod.R
R/draic.R
R/efpt.R
R/hmm-dists.R
R/hmm.R
R/hmodel2list.R
R/internals_doc.R
R/medists.R
R/msm-package.R
R/msm.R
R/mstate.R
R/olddata.R
R/optim.R
R/outputs.R
R/pearson.R
R/pexp.R
R/phase.R
R/plot.R
R/ppass.R
R/prevalence.R
R/print.R
R/qgeneric.R
R/scoreresid.R
R/simul.R
R/summary.R
R/tidy.R
R/tnorm.R
R/totlos.R
R/utils.R
R/viterbi.R
README.md
TODO
_pkgdown.yml
codecov.yml
data/bos3.rda
data/bos4.rda
data/msmdata.rda
docs/404.html
docs/authors.html
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inst/CITATION
inst/NEWS
man/MatrixExp.Rd
man/aneur.Rd
man/boot.msm.Rd
man/bos.Rd
man/cav.Rd
man/cmodel.object.Rd
man/coef.msm.Rd
man/crudeinits.msm.Rd
man/deltamethod.Rd
man/draic.msm.Rd
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man/hmm-dists.Rd
man/hmmMV.Rd
man/hmodel.object.Rd
man/hmodel2list.Rd
man/logLik.msm.Rd
man/lrtest.msm.Rd
man/medists.Rd
man/model.frame.msm.Rd
man/msm-package.Rd
man/msm.Rd
man/msm.form.qoutput.Rd
man/msm.object.Rd
man/msm2Surv.Rd
man/odds.msm.Rd
man/paramdata.object.Rd
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man/pexp.Rd
man/phasemeans.msm.Rd
man/plot.msm.Rd
man/plot.prevalence.msm.Rd
man/plot.survfit.msm.Rd
man/plotprog.msm.Rd
man/pmatrix.msm.Rd
man/pmatrix.piecewise.msm.Rd
man/pnext.msm.Rd
man/ppass.msm.Rd
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man/printold.msm.Rd
man/psor.Rd
man/qcmodel.object.Rd
man/qgeneric.Rd
man/qmatrix.msm.Rd
man/qmodel.object.Rd
man/qratio.msm.Rd
man/recreate.olddata.Rd
man/scoreresid.msm.Rd
man/sim.msm.Rd
man/simfitted.msm.Rd
man/simmulti.msm.Rd
man/sojourn.msm.Rd
man/statetable.msm.Rd
man/summary.msm.Rd
man/surface.msm.Rd
man/tidy.msm.Rd
man/tidy.msm.est.Rd
man/tidy.msm.estbystate.Rd
man/tidy.msm.prevalence.Rd
man/tnorm.Rd
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man/transient.msm.Rd
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src/Makevars
src/analyticp.c
src/expm.h
src/hmm.c
src/hmm.h
src/hmmderiv.c
src/lik.c
src/msm-init.c
src/msm.h
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tests/slow/localdata.r
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tests/slow/test_fits.r
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tests/slow/test_fits_hmmmulti.r
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tests/slow/test_outputs_slow.r
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vignettes/figures/sampling.pdf
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vignettes/msm-manual.Rnw
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