Man pages for chr1swallace/GUESSFM
Using GUESS for Fine Mapping
| abf2snpmod | abf2snpmod |
| abf.calc | Calculate Approximate Bayes Factors |
| abf.fit.parallel.setup | Internal function: create parallel.dir, save necessary files |
| abf.speedglm.fit | abf.speedglm.fit |
| accessors | Accessors for groups objects |
| addlines | addlines |
| best.models | Best models |
| best.snps | Best SNPs |
| calc.maxmin | calculate max or min of subset of a matrix |
| check.merge | Check if snp groups can be combined |
| cond.best | cond.best |
| conversion | Convert from old definitions of groups, tags classes to new |
| cummean | internal function: cumulative mean |
| ess2snpmod | ess2snpmod |
| ess.read | ess.read |
| expand.tags | Expand tags for a snpmod object |
| ggbed | Plot a bed file |
| ggchr | ggchr |
| ggld | ggld |
| ggsnp | ggsnp |
| group.multi | Group SNPs |
| groups-class | Group focused class for holding information about sets of... |
| groups.merge | merge groups |
| groups-subset | 'tagsof' shows tags for a named character vector of SNPs |
| GUESSFM | GUESSFM |
| guess.read | guess.read |
| guess.summ | Summarise a snpmod object |
| impute.missing | Fill in missing values in SnpMatrix object |
| makestr | Paste a list of SNPs in a consistent way to create a model... |
| model.union | Model unions |
| nmodes | nmodes |
| overlap | overlap |
| pattern.plot | pattern.plot |
| plot_diffuse | Diffusion plot |
| plot-methods | Plots |
| plotsummary | Summary plots |
| pp.nsnp | Summarize the posterior model support by the number of SNPs... |
| ppnsnp-class | Class to hold results of pp.nsnp |
| qc | Quality control |
| read.decode | read.decode |
| read.ess | ess.read |
| read.snpmod | read.snpmod |
| run.bvs | Bayesian variable selection |
| scalepos | Scale SNP positions |
| show.ld | show.ld |
| show-methods | Show |
| signal.plot | Signal Plot |
| skewness | skewness |
| snpin | Check whether a snp is in a snppicker, groups or tags object |
| snpmatrix.combine | snpmatrix.combine |
| snpmod.add | snpmod.add |
| snpmod-class | Class to hold data relating to multiple models fitted to SNP... |
| snp.picker | snp.picker |
| snppicker-class | Class to hold results of snp.picker algorithm |
| snppicker-subset | Subset snppicker object |
| snpprior | snpprior |
| snps.from.correlated.models | snps.from.correlated.models |
| summary | Summaries |
| summ.setminmax | summ.setminmax |
| tag | tag |
| textvenn | textvenn |
| union | Create a union of groups, snppicker or tags objects |
| xscale | xscale |
