groups-subset: 'tagsof' shows tags for a named character vector of SNPs

In chr1swallace/GUESSFM: Using GUESS for Fine Mapping

Description

tagsof shows tags for a named character vector of SNPs

taggedby shows SNPs tagged by a named character vector of tag SNPs

'[' will extract another object of the same class. '[[' will extract a single element.

Usage

tagsof(object, i)

taggedby(object, i)

## S4 method for signature 'tags,character'
taggedby(object, i)

## S4 method for signature 'tags,character'
tagsof(object, i)

## S4 method for signature 'groups,character'
taggedby(object, i)

## S4 method for signature 'groups,character'
tagsof(object, i)

## S4 method for signature 'groups,character,missing,missing'
x[i]

## S4 method for signature 'groups,numeric,missing,missing'
x[i]

## S4 method for signature 'groups,logical,missing,missing'
x[i]

## S4 method for signature 'tags,character,missing,missing'
x[i]

## S4 method for signature 'groups,numeric'
x[[i]]

## S4 method for signature 'groups,logical'
x[[i]]

## S4 method for signature 'groups,character'
x[[i]]

Arguments

object	tags or groups object
i	numeric, logical or character vector to index SNPs or tags
x	groups or tags object

Value

data.frame of tags and their tagged SNPs

subsetted groups or tags object

chr1swallace/GUESSFM documentation built on May 13, 2019, 6:17 p.m.