Description Usage Arguments Value Author(s)
guess.summ
1 2 3 | guess.summ(results, groups = NULL, snps = NULL, snp.data = NULL,
position = "position", tag.thr = 0.8, pp.thr = 0.01,
method = "complete")
|
results |
an object of class snpmod, or a named list of such objects |
groups |
object of class groups. If supplied, all SNPs here will be summarised, and grouped according to this structure |
snps |
data.frame giving details of the SNPs |
snp.data |
if groups is missing, tag groups are determined from this object of class SnpMatrix |
position |
name of column in snps data.frame giving SNP position. default="position" |
tag.thr |
if groups is missing, threshold at which to tag |
pp.thr |
if groups is missing, threshold above which SNPs are selected for summary. |
method |
if groups is missing, method to determine tag groups using heirarchical clustering, default is "complete" |
data.frame
Chris Wallace
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