group.multi: Group SNPs
In chr1swallace/GUESSFM: Using GUESS for Fine Mapping
Usage
Arguments
Value
Author(s)
Usage
1
group.multi(SM2, snp.data, min.mppi = 0.01, r2.minmerge = 0.5)
Arguments
SM2
snpmod object
snp.data
SnpMatrix for r2 calculation
min.mppi
trim snp groups with total MPPI < min.mppi in all
diseases
r2.minmerge
merge groups with minimum between-group r2 >
r2.minmerge
Value
list with three components.
First is a data.frame with each row giving summary statistics for
each group.
Second is a groups object, each elements ordered according to the rows of the summary
Third is the r2 matrix calculated.
Author(s)
Chris Wallace
chr1swallace/GUESSFM documentation built on May 13, 2019, 6:17 p.m.
R Package Documentation
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Usage Arguments Value Author(s)
Usage
1 | group.multi(SM2, snp.data, min.mppi = 0.01, r2.minmerge = 0.5)
|
Arguments
SM2 |
snpmod object |
snp.data |
SnpMatrix for r2 calculation |
min.mppi |
trim snp groups with total MPPI < min.mppi in all diseases |
r2.minmerge |
merge groups with minimum between-group r2 > r2.minmerge |
Value
list with three components.
First is a data.frame with each row giving summary statistics for each group.
Second is a groups object, each elements ordered according to the rows of the summary
Third is the r2 matrix calculated.
Author(s)
Chris Wallace
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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