characterizeMarkerThresholds: Characterize Marker Thresholds
In clajusch/ClEvaR: Cluster Evaluation in R

Description Usage Arguments Value

Construct a matrix of clusters with marker genes captured with ranges of effect size and cluster hit threshold values. The resulting matrix should help at selecting optimal threshold values.

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characterizeMarkerThresholds(FGDEGtab, esThresh = seq(0.5, 1, 0.01),
  nThresh = NULL, clusterColumn = "cluster_id",
  geneColumn = "entrez_id", effectColumn = "effect.size")

`FGDEGtab`	The raw FASTGenomics Differentially Expressed Gene table, e.g. the output from FASTGenomics calc_de_genes_nonparametric.
`esThresh`	A vector of minimal effect sizes; defaults to `seq(0.5, 1, .01)`.
`nThresh`	An optional vector of maximum cluster numbers that contain a potential marker gene; defaults to NULL, which takes the range between 1 and the maximum number of clusters found in the FGDGEtab.
`clusterColumn`	Column name for cluster assignment; defaults to "cluster_id".
`geneColumn`	Column name for gene ID; defaults to "entrez_id".
`effectColumn`	Column name for effect size; defaults to "effect.size".