makeScatterplot: Make a scatterplot.

In clajusch/ClEvaR: Cluster Evaluation in R

Description

Useful for 2D visualization of single cells colored with e.g. true cell type (the subject) and an assigned cluster (the query).

Usage

makeScatterplot(x, y, subject, query, subjectColors = NULL,
  x_lab = "x", y_lab = "y", subject_lab = "subject",
  query_lab = "query")

Arguments

x	Vector of x coordinates.
y	Vector of y coordinates.
subject	Vector of reference cluster assignments.
query	Vector of cluster assignments for comparison with reference.
subjectColors	A named Vector of colors for reference clusters. Uses rainbow colors if not assigned.
x_lab	Label for x axis. Defaults to "x".
y_lab	Label for y axis. Defaults to "y".
subject_lab	Label for subject legend. Defaults to "subject".
query_lab	Label for query legend. Defaults to "query".

clajusch/ClEvaR documentation built on May 9, 2019, 4:55 a.m.