Description Usage Arguments Value
Classify cells using marker genes.
1 2 | scoreCells(dataset, markerGenes = NULL, geneColumn = "entrez_id",
scoreColumn = "score", classColumn = "cell_type")
|
dataset |
A FASTGenomics Matrix of expression values. |
markerGenes |
An optional data frame with scores of marker genes for cell types; the immune cell markers compiled from Newman et al., Nature Methods (2015) is provided as default. |
geneColumn |
Gene column name in markerGenes data frame; defaults to |
scoreColumn |
Score column name in markerGenes data frame; defaults to |
classColumn |
Class column name in markerGenes data frame; defaults to |
A data frame with class assignment and scores for classes per cell.
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