confusionHeatmap: Plot a confusion heatmap.

In clajusch/ClEvaR: Cluster Evaluation in R

Description

Plot a confusion heatmap.

Usage

confusionHeatmap(subject, query, logCounts = FALSE, rankCounts = FALSE,
  cluster = FALSE, ...)

Arguments

subject	Vector of reference cluster assignments.
query	Vector of cluster assignments for comparison with reference.
logCounts	Should counts in confusion matrix be log10(counts+1) transformed? Defaults to FALSE.
rankCounts	Should counts in confusion matrix be ranked? Defaults to FALSE.
cluster	Should rows and columns be hierarchically clustered? Defaults to FALSE.
...	Further parameters for pheatmap function.

Value

A matrix with possibly transformed counts.

Examples

a = c(rep("A", 1000), rep("B", 100), rep("C", 10))
b = c(rep("A", 500), rep("B", 595), rep("C", 15))
confusionHeatmap(a, b)
confusionHeatmap(a, b, logCounts = T)
confusionHeatmap(a, b, rankCounts = T)

clajusch/ClEvaR documentation built on May 9, 2019, 4:55 a.m.