API for clatworthylab/bowerbird
A single-cell package for Functional Annotation + Gene Module Summarization.
| Global functions | |
|---|---|
| .closest_to_centroid | Source code |
| .create_graph | Source code |
| .emptyBOWER | Source code |
| .filter_geneset | Source code |
| .graph_to_data | Source code |
| .is_blank | Source code |
| .makeRankGeneList | Source code |
| .read_geneset | Source code |
| .retrieve_gsea | Source code |
| .sanitize | Source code |
| .typecheck | Source code |
| BOWER-class | Man page |
| bower | Man page Source code |
| check_udpipemodel | Source code |
| enrich_genesets | Man page Source code |
| enrich_genesets.Seurat | Man page Source code |
| enrich_genesets.SingleCellExperiment | Man page Source code |
| enrich_genesets.list | Man page Source code |
| extract_core | Man page Source code |
| extract_core.BOWER | Man page Source code |
| find_clusters | Man page Source code |
| find_clusters.BOWER | Man page Source code |
| find_clusters.igraph | Man page Source code |
| get_optional_data_filepath | Source code |
| plot_graph | Man page Source code |
| plot_graph.BOWER | Man page Source code |
| plot_graph.igraph | Man page Source code |
| range01 | Source code |
| read_geneset | Man page Source code |
| read_geneset.csv | Source code |
| read_geneset.data.frame | Source code |
| read_geneset.gmt | Source code |
| read_geneset.gmx | Source code |
| read_geneset.list | Source code |
| read_geneset.tsv | Source code |
| set_clusters | Man page Source code |
| set_clusters.BOWER | Man page Source code |
| snn_graph | Man page Source code |
| snn_graph.BOWER | Man page Source code |
| snn_graph.list | Man page Source code |
| summarize_clusters | Source code |
| summarize_clusters.BOWER | Man page Source code |
| summarize_clusters.igraph | Man page Source code |
