set_clusters: Set cluster to BOWER class
In clatworthylab/bowerbird: A single-cell package for Functional Annotation + Gene Module Summarization.
Description
Usage
Arguments
Value
Examples
Description
Manually sets externally/alternatively determined cluster assignment for each geneset.
Usage
1
2
## S3 method for class 'BOWER'
set_clusters(bower, clusters)
Arguments
bower
bower class
clusters
Cluster assignment for each geneset.
Value
bower class
Examples
1
2
3
gmt_file <- system.file("extdata", "h.all.v7.4.symbols.gmt", package = "bowerbird")
bwr <- bower(gmt_file)
bwr <- set_clusters(bwr, rep(1:5, each = 10)) # e.g. randomly make 5 blocks of 10 clusters
clatworthylab/bowerbird documentation built on Dec. 19, 2021, 5:15 p.m.
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Description Usage Arguments Value Examples
Description
Manually sets externally/alternatively determined cluster assignment for each geneset.
Usage
1 2 | ## S3 method for class 'BOWER'
set_clusters(bower, clusters)
|
Arguments
bower |
bower class |
clusters |
Cluster assignment for each geneset. |
Value
bower class
Examples
1 2 3 | gmt_file <- system.file("extdata", "h.all.v7.4.symbols.gmt", package = "bowerbird")
bwr <- bower(gmt_file)
bwr <- set_clusters(bwr, rep(1:5, each = 10)) # e.g. randomly make 5 blocks of 10 clusters
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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