find_clusters: clusters
In clatworthylab/bowerbird: A single-cell package for Functional Annotation + Gene Module Summarization.
Description
Usage
Arguments
Value
Examples
Description
Performs clustering of SNN graph of genesets.
Usage
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## S3 method for class 'BOWER'
find_clusters(bower, resolution = 3, ...)
## S3 method for class 'igraph'
find_clusters(gr, resolution = 3, ...)
Arguments
bower
BOWER class..
resolution
value for leiden clustering.
...
passed to leiden::leiden.
gr
igraph object.
Value
Cluster assignment for each geneset.
Examples
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gmt_file <- system.file("extdata", "h.all.v7.4.symbols.gmt", package = "bowerbird")
bwr <- bower(gmt_file)
bwr <- snn_graph(bwr)
bwr <- find_clusters(bwr)
bwr
clatworthylab/bowerbird documentation built on Dec. 19, 2021, 5:15 p.m.
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Description Usage Arguments Value Examples
Description
Performs clustering of SNN graph of genesets.
Usage
1 2 3 4 5 | ## S3 method for class 'BOWER'
find_clusters(bower, resolution = 3, ...)
## S3 method for class 'igraph'
find_clusters(gr, resolution = 3, ...)
|
Arguments
bower |
BOWER class.. |
resolution |
value for leiden clustering. |
... |
passed to leiden::leiden. |
gr |
igraph object. |
Value
Cluster assignment for each geneset.
Examples
1 2 3 4 5 | gmt_file <- system.file("extdata", "h.all.v7.4.symbols.gmt", package = "bowerbird")
bwr <- bower(gmt_file)
bwr <- snn_graph(bwr)
bwr <- find_clusters(bwr)
bwr
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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