extract_core: extract_core
In clatworthylab/bowerbird: A single-cell package for Functional Annotation + Gene Module Summarization.
Description
Usage
Arguments
Value
Examples
Description
Summarize the outersection genes for the. summary terms.
Usage
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## S3 method for class 'BOWER'
extract_core(bower, inplace = TRUE)
Arguments
bower
processed bower object.
inplace
whether or not to return an updated BOWER class or return the output as a list.
Value
Returns a list of genes that outersect geneset clusters in coregenes slot or as a list.
Examples
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gmt_file <- system.file("extdata", "h.all.v7.4.symbols.gmt", package = "bowerbird")
bwr <- bower(gmt_file)
bwr <- snn_graph(bwr)
bwr <- find_clusters(bwr)
bwr <- summarize_clusters(bwr, ncpus = 1)
extract_core(bwr)
clatworthylab/bowerbird documentation built on Dec. 19, 2021, 5:15 p.m.
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Description Usage Arguments Value Examples
Description
Summarize the outersection genes for the. summary terms.
Usage
1 2 | ## S3 method for class 'BOWER'
extract_core(bower, inplace = TRUE)
|
Arguments
bower |
processed bower object. |
inplace |
whether or not to return an updated BOWER class or return the output as a list. |
Value
Returns a list of genes that outersect geneset clusters in coregenes slot or as a list.
Examples
1 2 3 4 5 6 | gmt_file <- system.file("extdata", "h.all.v7.4.symbols.gmt", package = "bowerbird")
bwr <- bower(gmt_file)
bwr <- snn_graph(bwr)
bwr <- find_clusters(bwr)
bwr <- summarize_clusters(bwr, ncpus = 1)
extract_core(bwr)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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