read_geneset: read_geneset
In clatworthylab/bowerbird: A single-cell package for Functional Annotation + Gene Module Summarization.
Description
Usage
Arguments
Value
Examples
Description
Function to read various geneset file formats and returns a list of vectors containing gene names.
Usage
1
read_geneset(x, min_size = 15)
Arguments
x
file,
min_size
minimum size of geneset otherwise filter out.
Value
Returns a list of gene sets
Examples
1
2
3
gmt_file <- system.file("extdata", "h.all.v7.4.symbols.gmt", package = "bowerbird")
gs <- read_geneset(gmt_file)
head(gs)
clatworthylab/bowerbird documentation built on Dec. 19, 2021, 5:15 p.m.
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Description Usage Arguments Value Examples
Description
Function to read various geneset file formats and returns a list of vectors containing gene names.
Usage
1 | read_geneset(x, min_size = 15)
|
Arguments
x |
file, |
min_size |
minimum size of geneset otherwise filter out. |
Value
Returns a list of gene sets
Examples
1 2 3 | gmt_file <- system.file("extdata", "h.all.v7.4.symbols.gmt", package = "bowerbird")
gs <- read_geneset(gmt_file)
head(gs)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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