parse_gmt: Read a GMT file and return a list
In cmap/cmapR: CMap Tools in R
Description
Usage
Arguments
Details
Value
See Also
Examples
Description
Read a GMT file and return a list
Usage
1
2
3
Arguments
...
arguments passed on to parse_gmt
fname
the file path to be parsed
Details
parse_gmt returns a nested list object. The top
level contains one list per row in fname. Each of
these is itself a list with the following fields:
- head: the name of the data (row in fname)
- desc: description of the corresponding data
- len: the number of data items
- entry: a vector of the data items
Value
a list of the contents of fname. See details.
See Also
Visit http://clue.io/help for details on the GMT file format
Other CMap parsing functions:
lxb2mat(),
parse.gmx(),
parse.grp(),
write_gmt(),
write_grp()
Examples
1
2
3
gmt_path <- system.file("extdata", "query_up.gmt", package="cmapR")
gmt <- parse_gmt(gmt_path)
str(gmt)
cmap/cmapR documentation built on Oct. 14, 2021, 12:51 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value See Also Examples
Description
Read a GMT file and return a list
Usage
1 2 3 |
Arguments
... |
arguments passed on to |
fname |
the file path to be parsed |
Details
parse_gmt returns a nested list object. The top
level contains one list per row in fname. Each of
these is itself a list with the following fields:
- head: the name of the data (row in fname)
- desc: description of the corresponding data
- len: the number of data items
- entry: a vector of the data items
Value
a list of the contents of fname. See details.
See Also
Visit http://clue.io/help for details on the GMT file format
Other CMap parsing functions:
lxb2mat(),
parse.gmx(),
parse.grp(),
write_gmt(),
write_grp()
Examples
1 2 3 | gmt_path <- system.file("extdata", "query_up.gmt", package="cmapR")
gmt <- parse_gmt(gmt_path)
str(gmt)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.