parse_gmx: Read a GMX file and return a list
In cmap/cmapR: CMap Tools in R
Description
Usage
Arguments
Details
Value
See Also
Examples
Description
Read a GMX file and return a list
Usage
1
2
3
Arguments
...
arguments passed on to parse_gmx
fname
the file path to be parsed
Details
parse_gmx returns a nested list object. The top
level contains one list per column in fname. Each of
these is itself a list with the following fields:
- head: the name of the data (column in fname)
- desc: description of the corresponding data
- len: the number of data items
- entry: a vector of the data items
Value
a list of the contents of fname. See details.
See Also
Visit http://clue.io/help for details on the GMX file format
Other CMap parsing functions:
lxb2mat(),
parse.gmt(),
parse.grp(),
write_gmt(),
write_grp()
Examples
1
2
3
gmx_path <- system.file("extdata", "lm_probes.gmx", package="cmapR")
gmx <- parse_gmx(gmx_path)
str(gmx)
cmap/cmapR documentation built on Oct. 14, 2021, 12:51 a.m.
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Description Usage Arguments Details Value See Also Examples
Description
Read a GMX file and return a list
Usage
1 2 3 |
Arguments
... |
arguments passed on to |
fname |
the file path to be parsed |
Details
parse_gmx returns a nested list object. The top
level contains one list per column in fname. Each of
these is itself a list with the following fields:
- head: the name of the data (column in fname)
- desc: description of the corresponding data
- len: the number of data items
- entry: a vector of the data items
Value
a list of the contents of fname. See details.
See Also
Visit http://clue.io/help for details on the GMX file format
Other CMap parsing functions:
lxb2mat(),
parse.gmt(),
parse.grp(),
write_gmt(),
write_grp()
Examples
1 2 3 | gmx_path <- system.file("extdata", "lm_probes.gmx", package="cmapR")
gmx <- parse_gmx(gmx_path)
str(gmx)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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