lxb2mat: Read an LXB file and return a matrix

In cmap/cmapR: CMap Tools in R

Description

Read an LXB file and return a matrix

Usage

lxb2mat(lxb_path, columns = c("RID", "RP1"), newnames = c("barcode_id", "FI"))

Arguments

lxb_path	the path to the lxb file
columns	which columns in the lxb file to retain
newnames	what to name these columns in the returned matrix

Value

a matrix

See Also

Other CMap parsing functions: parse.gmt(), parse.gmx(), parse.grp(), write_gmt(), write_grp()

Examples

lxb_path <- system.file("extdata", "example.lxb", package="cmapR")
lxb_data <- lxb2mat(lxb_path)
str(lxb_data)

cmap/cmapR documentation built on Oct. 14, 2021, 12:51 a.m.