cmapR: CMap Tools in R

Description Usage Arguments Details Value See Also Examples

Return a subset of requested GCTX row/colum ids out of the universe of all ids

1	process_ids(ids, all_ids, type = "rid")

`ids`	vector of requested ids. If `NULL`, no subsetting is performed
`all_ids`	vector of universe of ids
`type`	flag indicating the type of ids being processed

This is a low-level helper function which most users will not need to access directly

a list with the following elements ids: a character vector of the processed ids idx: an integer list of their corresponding indices in all_ids

Other GCTX parsing functions: GCT, append.dim(), fix.datatypes(), parse.gctx(), read.gctx.ids(), read.gctx.meta(), write.gctx.meta(), write.gctx(), write.gct()

gct_file <- system.file("extdata", "modzs_n25x50.gctx", package="cmapR")
ids <- read_gctx_ids(gct_file)
processed_ids <- cmapR:::process_ids(ids[1:10], ids)
str(processed_ids)