Files in cmu-delphi/epipredict

Basic epidemiology forecasting methods

.github/pull_request_template.md DEVELOPMENT.md LICENSE.md NEWS.md R/arx_classifier.R R/arx_forecaster.R R/autoplot.R R/blueprint-epi_recipe-default.R R/canned-epipred.R R/cdc_baseline_forecaster.R R/check_enough_train_data.R R/compat-purrr.R R/compat-recipes.R R/dist_quantiles.R R/epi_check_training_set.R R/epi_recipe.R R/epi_selectors.R R/epi_shift.R R/epi_workflow.R R/epipredict-package.R R/extract.R R/extrapolate_quantiles.R R/flatline.R R/flatline_forecaster.R R/flusight_hub_formatter.R R/frosting.R R/get_test_data.R R/import-standalone-purrr.R R/key_colnames.R R/layer_add_forecast_date.R R/layer_add_target_date.R R/layer_cdc_flatline_quantiles.R R/layer_naomit.R R/layer_point_from_distn.R R/layer_population_scaling.R R/layer_predict.R R/layer_predictive_distn.R R/layer_quantile_distn.R R/layer_residual_quantiles.R R/layer_threshold_preds.R R/layer_unnest.R R/layers.R R/make_flatline_reg.R R/make_grf_quantiles.R R/make_quantile_reg.R R/make_smooth_quantile_reg.R R/model-methods.R R/pivot_quantiles.R R/print_epi_step.R R/print_layer.R R/reexports.R R/step_adjust_latency.R R/step_epi_naomit.R R/step_epi_shift.R R/step_epi_slide.R R/step_growth_rate.R R/step_lag_difference.R R/step_population_scaling.R R/step_training_window.R R/tidy.R R/time_types.R R/utils-arg.R R/utils-latency.R R/utils-misc.R R/utils-pipe.R R/weighted_interval_score.R R/workflow-printing.R R/zzz.R README.Rmd README.md inst/other-vignettes/symptom-surveys.Rmd man-roxygen/step-return.R man/Add_model.Rd man/add_epi_recipe.Rd man/add_frosting.Rd man/add_layer.Rd man/add_shifted_columns.Rd man/adjust_epi_recipe.Rd man/adjust_frosting.Rd man/apply_frosting.Rd man/arx_args_list.Rd man/arx_class_args_list.Rd man/arx_class_epi_workflow.Rd man/arx_classifier.Rd man/arx_fcast_epi_workflow.Rd man/arx_forecaster.Rd man/augment.epi_workflow.Rd man/autoplot-epipred.Rd man/cdc_baseline_args_list.Rd man/cdc_baseline_forecaster.Rd man/check_enough_train_data.Rd man/check_interminable_latency.Rd man/check_pname.Rd man/clean_f_name.Rd man/construct_shift_tibble.Rd man/count_single_column.Rd man/dist_quantiles.Rd man/drop_ignored_keys.Rd man/epi_recipe.Rd man/epi_shift_single.Rd man/epi_slide_wrapper.Rd man/epi_workflow.Rd man/extract_argument.Rd man/extract_frosting.Rd man/extrapolate_quantiles.Rd man/fit-epi_workflow.Rd man/flatline.Rd man/flatline_args_list.Rd man/flatline_forecaster.Rd man/flusight_hub_formatter.Rd man/forecast.epi_workflow.Rd man/format_varnames.Rd man/frosting.Rd man/get_forecast_date.Rd man/get_forecast_date_in_layer.Rd man/get_latency.Rd man/get_latency_table.Rd man/get_sign.Rd man/get_test_data.Rd man/grf_quantiles.Rd man/is_epi_recipe.Rd man/is_epi_workflow.Rd man/layer-processors.Rd man/layer.Rd man/layer_add_forecast_date.Rd man/layer_add_target_date.Rd man/layer_cdc_flatline_quantiles.Rd man/layer_naomit.Rd man/layer_point_from_distn.Rd man/layer_population_scaling.Rd man/layer_predict.Rd man/layer_predictive_distn.Rd man/layer_quantile_distn.Rd man/layer_residual_quantiles.Rd man/layer_threshold.Rd man/layer_unnest.Rd man/nested_quantiles.Rd man/new_epi_recipe_blueprint.Rd man/pad_to_end.Rd man/pipe.Rd man/pivot_quantiles_longer.Rd man/pivot_quantiles_wider.Rd man/predict-epi_workflow.Rd man/quantile_reg.Rd man/reexports.Rd man/seq_forward.Rd man/slather.Rd man/smooth_quantile_reg.Rd man/step_adjust_latency.Rd man/step_adjust_latency_checks.Rd man/step_epi_naomit.Rd man/step_epi_shift.Rd man/step_epi_slide.Rd man/step_growth_rate.Rd man/step_lag_difference.Rd man/step_population_scaling.Rd man/step_training_window.Rd man/tidy.frosting.Rd man/update.layer.Rd man/weighted_interval_score.Rd tests/testthat.R tests/testthat/_snaps/arg_is_.md tests/testthat/_snaps/arx_args_list.md tests/testthat/_snaps/arx_cargs_list.md tests/testthat/_snaps/bake-method.md tests/testthat/_snaps/check-training-set.md tests/testthat/_snaps/check_enough_train_data.md tests/testthat/_snaps/dist_quantiles.md tests/testthat/_snaps/epi_recipe.md tests/testthat/_snaps/epi_workflow.md tests/testthat/_snaps/extract_argument.md tests/testthat/_snaps/flatline_args_list.md tests/testthat/_snaps/frosting.md tests/testthat/_snaps/get_test_data.md tests/testthat/_snaps/layer_add_forecast_date.md tests/testthat/_snaps/layer_add_target_date.md tests/testthat/_snaps/layer_residual_quantiles.md tests/testthat/_snaps/layers.md tests/testthat/_snaps/parse_period.md tests/testthat/_snaps/parsnip_model_validation.md tests/testthat/_snaps/pivot_quantiles.md tests/testthat/_snaps/population_scaling.md tests/testthat/_snaps/shuffle.md tests/testthat/_snaps/snapshots.md tests/testthat/_snaps/step_adjust_latency.md tests/testthat/_snaps/step_epi_naomit.md tests/testthat/_snaps/step_epi_shift.md tests/testthat/_snaps/step_epi_slide.md tests/testthat/_snaps/step_growth_rate.md tests/testthat/_snaps/step_lag_difference.md tests/testthat/_snaps/wis-dist-quantiles.md tests/testthat/test-arg_is_.R tests/testthat/test-arx_args_list.R tests/testthat/test-arx_cargs_list.R tests/testthat/test-arx_forecaster.R tests/testthat/test-bake-method.R tests/testthat/test-blueprint.R tests/testthat/test-check-training-set.R tests/testthat/test-check_enough_train_data.R tests/testthat/test-dist_quantiles.R tests/testthat/test-epi_recipe.R tests/testthat/test-epi_shift.R tests/testthat/test-epi_workflow.R tests/testthat/test-extract_argument.R tests/testthat/test-flatline_args_list.R tests/testthat/test-frosting.R tests/testthat/test-get_test_data.R tests/testthat/test-grf_quantiles.R tests/testthat/test-key_colnames.R tests/testthat/test-layer_add_forecast_date.R tests/testthat/test-layer_add_target_date.R tests/testthat/test-layer_naomit.R tests/testthat/test-layer_predict.R tests/testthat/test-layer_residual_quantiles.R tests/testthat/test-layer_threshold_preds.R tests/testthat/test-layers.R tests/testthat/test-parse_period.R tests/testthat/test-parsnip_model_validation.R tests/testthat/test-pivot_quantiles.R tests/testthat/test-population_scaling.R tests/testthat/test-replace_Inf.R tests/testthat/test-shuffle.R tests/testthat/test-snapshots.R tests/testthat/test-step_adjust_latency.R tests/testthat/test-step_epi_naomit.R tests/testthat/test-step_epi_shift.R tests/testthat/test-step_epi_slide.R tests/testthat/test-step_growth_rate.R tests/testthat/test-step_lag_difference.R tests/testthat/test-step_training_window.R tests/testthat/test-target_date_bug.R tests/testthat/test-utils_latency.R tests/testthat/test-wis-dist-quantiles.R vignettes/_common.R vignettes/articles/smooth-qr.Rmd vignettes/arx-classifier.Rmd vignettes/backtesting.Rmd vignettes/epipredict.Rmd vignettes/panel-data.Rmd vignettes/preprocessing-and-models.Rmd vignettes/update.Rmd