Man pages for cnobles/spraphal
Sparse Graph-based Analysis
| alias_arbiter | Assign consistant ID to variable given various alias IDs from... |
| append_by_enrich | Add vertices to a list based on p-value cutoff / enrichment |
| append_vertices_to_lists | Append vertices in a list to vertex lists depending on... |
| comp_bipartite_prob | Approximate the probability of interactions between two... |
| comp_edgeset_prob | Compute edgeset probability. |
| comp_enrichment | Calculate the enrichment within an ordered list of verticies. |
| comp_lambda | Compute the number of expected connections between a set of... |
| comp_lambda_bipartite | Compute the number of expected connections between two sets... |
| comp_outside_vertex_prob | Approximate the probability of a vertex not within a list... |
| comp_pij | Compute the probability of vertex i connecting to vertex j. |
| comp_sparse_prob | Compute probability for sparse graph edges. |
| comp_vertex_prob | Approximate the probability of each vertex within a list... |
| construct_graph | Construct graph from data.frame |
| count_edges | Count edges within a graph or edges between two... |
| map_names | Match gene names within data to vertex identifiers with a... |
| plot_bipartite | Plot bipartite graph using ggnet2 |
| plot_cluster | Plot cluster with probablistic coloring of the nodes with... |
| plot_clusters | Plot graph with a list of vertex lists using ggnet2 |
| plot_enrichment_analysis | Plot enrichment analysis of ordered verticies. |
| plot_subgraph | Plot subgraph using ggnet2 |
| prune_by_enrich | Prune vertices from vertex list based on p-value cutoff /... |
| sparseness | Test graph for sparseness |
