append_vertices_to_lists: Append vertices in a list to vertex lists depending on...

Description Usage Arguments Author(s)

Description

Append vertices in a list to vertex lists depending on enrichment

Usage

1
append_vertices_to_lists(G, L, v, cutoff, collect = FALSE)

Arguments

G

igraph which contains vertex identifiers present in 'L' and 'v'.

L

list of vectors with vertex identifiers. This list will function as the base lists for which vertices from 'v' will be added to based on the best enrichment.

v

vector of vertex identifiers to be added to vertex lists in 'L'. Vertices will only be added if they are below the 'cutoff' p-value. If there are multiple possibilities, vertices will only be added to the most significant match.

cutoff

numeric. Cutoff enrichment value (p-value) for which to add vertices from 'v' to vectors in 'L'.

collect

logical. If TRUE, the output will contain a listed object with the names of 'adjusted_lists' and 'remaining_vertices'.

Author(s)

Christopher Nobles, Ph.D.


cnobles/spraphal documentation built on May 28, 2019, 7:35 p.m.