plot_clusters: Plot graph with a list of vertex lists using ggnet2

In cnobles/spraphal: Sparse Graph-based Analysis

Description

Plot graph with a list of vertex lists using ggnet2

Usage

plot_clusters(Lc, G, set.v = "Set1", set.e = "grey50", ...)

Arguments

Lc	list of character vectors holding information on vertex ids for different clusters or groups of vertices. Each object in the list will be given a different color. Additionally, names of the list will be used in the legend, unless no names are supplied. If a vertex in named on more than one list, it will be colored black and pushed into an intersecting group.
G	igraph object from which vertices in Lc will be used to create a subgraph.
set.v	character, Set name to be passed on to RColorBrewer::brewer.pal to select color palette for vertices. If name supplied is not in brewer.pal.info, then the name will be treated as a color and passed as a constant color for vertices.
set.e	character, Set name to be passed on to RColorBrewer::brewer.pal to select color palette for edges. If name supplied is not in brewer.pal.info, then the name will be treated as a color and passed as a constant color for edges.
...	arguments to be passed into ggnet2.

Author(s)

Christopher Nobles, Ph.D.

cnobles/spraphal documentation built on May 28, 2019, 7:35 p.m.