Files in compbiocore/qckitalign
Quality Control for Mapped Reads
.Rbuildignore
.travis.yml
DESCRIPTION
NAMESPACE
R/GC_content.R
R/bam_reads.R
R/chimeric_reads.R
R/chromosome.R
R/cigar_partition.R
R/cigar_plot.R
R/cigar_prof.R
R/coverage.R
R/dup_rad.R
R/insert_size.R
R/map_qua.R
R/mult_map.R
R/unmapped_reads.R
R/unq_mapping.R
README.md
inst/.DS_Store
inst/extdata/.DS_Store
inst/extdata/5267readsAligned.bam
inst/extdata/fusion5267and11759reads.bam
inst/extdata/rname.bam
inst/extdata/rname.bam.bai
inst/extdata/rname.sam
inst/extdata/sa.bam
inst/extdata/sa.bam.bai
inst/extdata/sa.sam
inst/extdata/tags_rname.bam
inst/extdata/tags_rname.bam.bai
inst/extdata/tags_rname.sam
man/bam_reads.Rd
man/bam_records.Rd
man/chimeric_proportion.Rd
man/chimeric_reads.Rd
man/chimeric_rname.Rd
man/chimeric_tags.Rd
man/chromosome.Rd
man/cigar_partition.Rd
man/cigar_prof.Rd
man/cover_age.Rd
man/insert_size.Rd
man/map_qua.Rd
man/mult_map.Rd
man/num_chimeric.Rd
man/unmapped_reads.Rd
man/unq_map.Rd
qckitalign.Rproj
src/.gitignore
src/Makevars
tests/testthat.R
tests/testthat/test_bam_reads.R
tests/testthat/test_chimeric_reads.R
tests/testthat/test_chromo.R
tests/testthat/test_coverage.R
tests/testthat/test_multmap.R
tests/testthat/test_read_bam_or_sam.R
tests/testthat/test_unmap.R
tests/testthat/test_unqmap.R
vignettes/Overview.Rmd
