bam_reads: Returns the number of distinct reads in the BAM file...
In compbiocore/qckitalign: Quality Control for Mapped Reads
Description
Usage
Arguments
Details
Description
How chimeric reads are defined is described in 'chimeric_reads'.
Usage
1
bam_reads(bamfile, checks = 3)
Arguments
bamfile
path to the BAM file
checks
1 indicates checking only for SA tag, 2 only for rname, and 3 for both. Default is both.
Details
Planned improvements: Because Rsamtools does not have the capability for the 0x800 flag, implement
as a function based on the RSeqAn library instead for easier flagging of chimeric reads.
compbiocore/qckitalign documentation built on May 21, 2019, 9:48 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details
Description
How chimeric reads are defined is described in 'chimeric_reads'.
Usage
1 | bam_reads(bamfile, checks = 3)
|
Arguments
bamfile |
path to the BAM file |
checks |
1 indicates checking only for SA tag, 2 only for rname, and 3 for both. Default is both. |
Details
Planned improvements: Because Rsamtools does not have the capability for the 0x800 flag, implement as a function based on the RSeqAn library instead for easier flagging of chimeric reads.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.