locations: Helper Function for MetaScope ID

In compbiomed/MetaScope: Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data

Helper Function for MetaScope ID

Description

Used to create plots of genome coverage for any number of accession numbers

Usage

locations(
  which_taxid,
  which_genome,
  accessions,
  taxids,
  reads,
  out_base,
  out_dir
)

Arguments

which_taxid	Which taxid to plot
which_genome	Which genome to plot
accessions	List of accessions from metascope_id()
taxids	List of accessions from metascope_id()
reads	List of reads from input file
out_base	The basename of the input file
out_dir	The path to the input file

Value

A plot of the read coverage for a given genome

compbiomed/MetaScope documentation built on April 1, 2024, 5:35 p.m.