bam_reheader_R | R Documentation |
This function replaces the header from one .bam file with a header from a different .sam file. This function mimics the function of the 'reheader' function in samtools. It is not intended for use by users.
bam_reheader_R(
head,
old_bam,
new_bam = paste(tools::file_path_sans_ext(old_bam), "h.bam", sep = "")
)
head |
A file name and location for the .sam file with the new header. |
old_bam |
A file name and location for the .bam file which you would |
new_bam |
A file name for the new .bam file with a replaced header. Defaults to the same base filename plus 'h.bam'. For example, 'example.bam' will be written as 'exampleh.bam'. |
This function will return a new .bam file with a replaced header. The function also outputs the new .bam filename.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.