API for compbiomed/MetaScope
Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data
| Global functions | |
|---|---|
| MetaScope | Man page |
| MetaScope-package | Man page |
| align_details | Man page |
| align_target | Man page Source code |
| align_target_bowtie | Man page Source code |
| bam_reheader_R | Man page Source code |
| combined_header | Man page Source code |
| convert_animalcules | Man page Source code |
| count_matches | Man page Source code |
| create_MAE | Source code |
| create_qiime_biom | Source code |
| demultiplex | Man page Source code |
| download_genomes | Source code |
| download_parentkingdom | Source code |
| download_refseq | Man page Source code |
| extractReads | Man page Source code |
| filter_host | Man page Source code |
| filter_host_bowtie | Man page Source code |
| filter_unmapped_reads | Man page Source code |
| find_accessions | Source code |
| generate_taxonomy_table | Man page Source code |
| get_alignscore | Source code |
| get_assignments | Source code |
| get_children | Man page Source code |
| get_speciestab | Source code |
| get_table | Source code |
| id_kingdom_rank | Source code |
| identify_rnames | Source code |
| locations | Man page Source code |
| merge_bam_files | Man page Source code |
| metascope_id | Man page Source code |
| mk_bowtie_index | Man page Source code |
| mk_interim_fastq | Source code |
| mk_subread_index | Man page Source code |
| obtain_reads | Source code |
| read_in_id | Source code |
| remove_matches | Man page Source code |
| taxonomy_table | Man page |
