API for compbiomed/MetaScope
Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data

Global functions
MetaScope Man page
MetaScope-package Man page
align_details Man page
align_target Man page Source code
align_target_bowtie Man page Source code
bam_reheader_R Man page Source code
combined_header Man page Source code
convert_animalcules Man page Source code
count_matches Man page Source code
create_MAE Source code
create_qiime_biom Source code
demultiplex Man page Source code
download_genomes Source code
download_parentkingdom Source code
download_refseq Man page Source code
extractReads Man page Source code
filter_host Man page Source code
filter_host_bowtie Man page Source code
filter_unmapped_reads Man page Source code
find_accessions Source code
generate_taxonomy_table Man page Source code
get_alignscore Source code
get_assignments Source code
get_children Man page Source code
get_speciestab Source code
get_table Source code
id_kingdom_rank Source code
identify_rnames Source code
locations Man page Source code
merge_bam_files Man page Source code
metascope_id Man page Source code
mk_bowtie_index Man page Source code
mk_interim_fastq Source code
mk_subread_index Man page Source code
obtain_reads Source code
read_in_id Source code
remove_matches Man page Source code
taxonomy_table Man page
compbiomed/MetaScope documentation built on Aug. 9, 2022, 10:41 a.m.