tSNE_scatter: Feature boxplot

In computational-metabolomics/structToolbox: Data processing & analysis tools for Metabolomics and other omics

Feature boxplot

Description

plots the new representation of data after applying tSNE.

Usage

tSNE_scatter(factor_name, ...)

Arguments

factor_name	(character) The name of a sample-meta column to use.
...	Additional slots and values passed to struct_class.

Details

This object makes use of functionality from the following packages:

• Rtsne

Value

A tSNE_scatter object. This object has no output slots. See chart_plot in the struct package to plot this chart object.

Inheritance

A tSNE_scatter object inherits the following struct classes:

⁠[tSNE_scatter]⁠ >> ⁠[chart]⁠ >> ⁠[struct_class]⁠

References

Krijthe JH (2015). Rtsne: T-Distributed Stochastic Neighbor Embedding using Barnes-Hut Implementation. R package version 0.17, https://github.com/jkrijthe/Rtsne.

van der Maaten L, Hinton G (2008). "Visualizing High-Dimensional Data Using t-SNE." Journal of Machine Learning Research, 9, 2579-2605.

van der Maaten L (2014). "Accelerating t-SNE using Tree-Based Algorithms." Journal of Machine Learning Research, 15, 3221-3245.

Examples

M = tSNE_scatter(
      factor_name = "V1")

M = tSNE_scatter(factor_name='Species')

computational-metabolomics/structToolbox documentation built on Feb. 12, 2024, 2:15 a.m.