tic_chart: Total Ion Count chart.

In computational-metabolomics/structToolbox: Data processing & analysis tools for Metabolomics and other omics

Total Ion Count chart.

Description

A scatter plot of Total Ion Count (sum of each sample) versus run order.

Usage

tic_chart(run_order, factor_name, connected = FALSE, ...)

Arguments

run_order	(character) The column name of sample_meta indicating the run order of the samples.
factor_name	(character) The name of a sample-meta column to use.
connected	(logical) Plot samples connected by a grey line. The default is FALSE.
...	Additional slots and values passed to struct_class.

Value

A tic_chart object. This object has no output slots. See chart_plot in the struct package to plot this chart object.

Inheritance

A tic_chart object inherits the following struct classes:

⁠[tic_chart]⁠ >> ⁠[chart]⁠ >> ⁠[struct_class]⁠

Examples

M = tic_chart(
      factor_name = "V1",
      run_order = character(0),
      connected = FALSE)

D = iris_DatasetExperiment()
D$sample_meta$run_order=1:nrow(D)
C = tic_chart(factor_name='Species',run_order='run_order')
chart_plot(C,D)

computational-metabolomics/structToolbox documentation built on Feb. 12, 2024, 2:15 a.m.