filter_smeta: Filter by sample meta data

In computational-metabolomics/structtoolbox: Data processing & analysis tools for Metabolomics and other omics

Filter by sample meta data

Description

The data is filtered by so that the named levels of a factor are included/excluded from the dataset.

Usage

filter_smeta(mode = "include", levels, factor_name, ...)

Arguments

mode	(character) Mode of action. Allowed values are limited to the following: "include": Samples in the specified levels are retained. "exclude": Samples in the specified levels are excluded. The default is "include".
levels	(character) The level name(s) for filtering.
factor_name	(character) The name of a sample-meta column to use.
...	Additional slots and values passed to struct_class.

Value

A filter_smeta object with the following output slots:

filtered	(DatasetExperiment)

Inheritance

A filter_smeta object inherits the following struct classes:

⁠[filter_smeta]⁠ >> ⁠[model]⁠ >> ⁠[struct_class]⁠

Examples

M = filter_smeta(
      mode = "include",
      levels = character(0),
      factor_name = "V1")

D = MTBLS79_DatasetExperiment()
M = filter_smeta(mode='exclude',levels='QC',factor_name='QC')
M = model_apply(M,D)

computational-metabolomics/structtoolbox documentation built on Feb. 9, 2024, 8:19 a.m.