API for computational-metabolomics/structtoolbox
Some tools bult using the struct package

Global functions
ANOVA Man page
ANOVA-class Man page
HCA Man page
HCA-class Man page
HSD Man page
HSD-class Man page
HSDEM Man page
HSDEM-class Man page
PCA Man page
PCA-class Man page
PCA.dstat Man page
PCA.dstat-class Man page
PCA.scree Man page
PCA.scree-class Man page
PLSDA Man page
PLSDA-class Man page
PLSFC Man page
PLSFC-class Man page
PLSR Man page
PLSR-class Man page
aov2lme Source code
ascale Source code
autoscale Man page
autoscale-class Man page
balanced_accuracy Man page
balanced_accuracy-class Man page
blank_filter Man page
blank_filter-class Man page
blank_filter.hist Man page
blank_filter.hist-class Man page
bootstrap Man page
bootstrap-class Man page
calculate Man page
calculate,balanced_accuracy-method Man page
calculate,r_squared-method Man page
center_colmeans Source code
chart.plot,PCA.dstat,PCA-method Man page
chart.plot,PCA.scree,PCA-method Man page
chart.plot,blank_filter.hist,blank_filter-method Man page
chart.plot,compare_dist,dataset-method Man page
chart.plot,confounders_lsq.barchart,confounders_clsq-method Man page
chart.plot,confounders_lsq.boxplot,confounders_clsq-method Man page
chart.plot,dataset.boxplot,dataset-method Man page
chart.plot,dataset.dist,dataset-method Man page
chart.plot,dataset.factor_barchart,dataset-method Man page
chart.plot,dataset.heatmap,dataset-method Man page
chart.plot,feature_boxplot,dataset-method Man page
chart.plot,feature_profile,dataset-method Man page
chart.plot,fold_change_plot,fold_change-method Man page
chart.plot,fs_line,forward_selection_byrank-method Man page
chart.plot,gs_line,grid_search_1d-method Man page
chart.plot,hca_dendrogram,HCA-method Man page
chart.plot,kfoldxcv_grid,kfold_xval-method Man page
chart.plot,kfoldxcv_metric,kfold_xval-method Man page
chart.plot,kw_p_hist,kw_rank_sum-method Man page
chart.plot,mv_boxplot,dataset-method Man page
chart.plot,mv_feature_filter.hist,mv_feature_filter-method Man page
chart.plot,mv_histogram,dataset-method Man page
chart.plot,mv_sample_filter.hist,mv_sample_filter-method Man page
chart.plot,pca_biplot_plot,PCA-method Man page
chart.plot,pca_correlation_plot,PCA-method Man page
chart.plot,pca_loadings_plot,PCA-method Man page
chart.plot,pca_scores_plot,PCA-method Man page
chart.plot,permutation_test.boxplot,permutation_test-method Man page
chart.plot,permutation_test.hist,permutation_test-method Man page
chart.plot,permutation_test.scatter,permutation_test-method Man page
chart.plot,permutation_test.violin,permutation_test-method Man page
chart.plot,plsda_scores_plot,PLSDA-method Man page
chart.plot,plsr_cook_dist,PLSR-method Man page
chart.plot,plsr_prediction_plot,PLSR-method Man page
chart.plot,plsr_qq_plot,PLSR-method Man page
chart.plot,plsr_residual_hist,PLSR-method Man page
chart.plot,pqn_norm.hist,pqn_norm-method Man page
chart.plot,rsd_filter.hist,rsd_filter-method Man page
chart.plot,tSNE_scatter,tSNE-method Man page
chart.plot,wilcox_p_hist,wilcox_test-method Man page
circleFun Source code
classical_lsq Man page
classical_lsq-class Man page
compare_dist Man page
compare_dist-class Man page
confounders_clsq Man page
confounders_clsq-class Man page
confounders_lsq.barchart Man page
confounders_lsq.barchart-class Man page
confounders_lsq.boxplot Man page
confounders_lsq.boxplot-class Man page
corr_coef Man page
corr_coef-class Man page
dataset.boxplot Man page
dataset.boxplot-class Man page
dataset.dist Man page
dataset.dist-class Man page
dataset.factor_barchart Man page
dataset.factor_barchart-class Man page
dataset.heatmap Man page
dataset.heatmap-class Man page
dratio_filter Man page
dratio_filter-class Man page
eval_loess Source code
feature_boxplot Man page
feature_boxplot-class Man page
feature_profile Man page
feature_profile-class Man page
filter_by_name Man page
filter_by_name-class Man page
filter_na_count Man page
filter_na_count-class Man page
filter_smeta Man page
filter_smeta-class Man page
first_min Source code
fisher_exact Man page
fisher_exact-class Man page
fold_change Man page
fold_change-class Man page
fold_change_int Man page
fold_change_int-class Man page
fold_change_plot Man page
fold_change_plot-class Man page
forward_selection_byrank Man page
forward_selection_byrank-class Man page
fs_line Man page
fs_line-class Man page
full_fact Source code
gauss_intersect Source code
glog_transform Man page
glog_transform-class Man page
grid_search_1d Man page
grid_search_1d-class Man page
gs_line Man page
gs_line-class Man page
hca_dendrogram Man page
hca_dendrogram-class Man page
kfold_xval Man page
kfold_xval-class Man page
kfoldxcv_grid Man page
kfoldxcv_grid-class Man page
kfoldxcv_metric Man page
kfoldxcv_metric-class Man page
knn_impute Man page
knn_impute-class Man page
kw_p_hist Man page
kw_p_hist-class Man page
kw_rank_sum Man page
kw_rank_sum-class Man page
linear_model Man page
linear_model-class Man page
log_transform Man page
log_transform-class Man page
mean_centre Man page
mean_centre-class Man page
mixed_effect Man page
mixed_effect-class Man page
model.apply Man page
model.apply,ANOVA,dataset-method Man page
model.apply,HCA,dataset-method Man page
model.apply,HSD,dataset-method Man page
model.apply,HSDEM,dataset-method Man page
model.apply,PLSFC,dataset-method Man page
model.apply,classical_lsq,dataset-method Man page
model.apply,confounders_clsq,dataset-method Man page
model.apply,corr_coef,dataset-method Man page
model.apply,filter_by_name,dataset-method Man page
model.apply,filter_smeta,dataset-method Man page
model.apply,fisher_exact,dataset-method Man page
model.apply,fold_change,dataset-method Man page
model.apply,fold_change_int,dataset-method Man page
model.apply,glog_transform,dataset-method Man page
model.apply,knn_impute,dataset-method Man page
model.apply,kw_rank_sum,dataset-method Man page
model.apply,log_transform,dataset-method Man page
model.apply,mixed_effect,dataset-method Man page
model.apply,mv_sample_filter,dataset-method Man page
model.apply,pairs_filter,dataset-method Man page
model.apply,pqn_norm,dataset-method Man page
model.apply,prop_na,dataset-method Man page
model.apply,rsd_filter,dataset-method Man page
model.apply,sb_corr,dataset-method Man page
model.apply,split_data,dataset-method Man page
model.apply,tSNE,dataset-method Man page
model.apply,ttest,dataset-method Man page
model.apply,vec_norm,dataset-method Man page
model.apply,wilcox_test,dataset-method Man page
model.predict Man page
model.predict,PCA,dataset-method Man page
model.predict,PLSDA,dataset-method Man page
model.predict,PLSR,dataset-method Man page
model.predict,autoscale,dataset-method Man page
model.predict,blank_filter,dataset-method Man page
model.predict,dratio_filter,dataset-method Man page
model.predict,filter_by_name,dataset-method Man page
model.predict,filter_na_count,dataset-method Man page
model.predict,filter_smeta,dataset-method Man page
model.predict,linear_model,dataset-method Man page
model.predict,mean_centre,dataset-method Man page
model.predict,mv_feature_filter,dataset-method Man page
model.predict,mv_sample_filter,dataset-method Man page
model.predict,vec_norm,dataset-method Man page
model.reverse Man page
model.reverse,mean_centre,dataset-method Man page
model.train Man page
model.train,PCA,dataset-method Man page
model.train,PLSDA,dataset-method Man page
model.train,PLSR,dataset-method Man page
model.train,autoscale,dataset-method Man page
model.train,blank_filter,dataset-method Man page
model.train,dratio_filter,dataset-method Man page
model.train,filter_by_name,dataset-method Man page
model.train,filter_na_count,dataset-method Man page
model.train,filter_smeta,dataset-method Man page
model.train,linear_model,dataset-method Man page
model.train,mean_centre,dataset-method Man page
model.train,mv_feature_filter,dataset-method Man page
model.train,mv_sample_filter,dataset-method Man page
model.train,pairs_filter,dataset-method Man page
model.train,vec_norm,dataset-method Man page
mv_boxplot Man page
mv_boxplot-class Man page
mv_feature_filter Man page
mv_feature_filter-class Man page
mv_feature_filter.hist Man page
mv_feature_filter.hist-class Man page
mv_histogram Man page
mv_histogram-class Man page
mv_sample_filter Man page
mv_sample_filter-class Man page
mv_sample_filter.hist Man page
mv_sample_filter.hist-class Man page
pairs_filter Man page
pairs_filter-class Man page
pca_biplot_plot Man page
pca_biplot_plot-class Man page
pca_correlation_plot Man page
pca_correlation_plot-class Man page
pca_loadings_plot Man page
pca_loadings_plot-class Man page
pca_scores_plot Man page
pca_scores_plot-class Man page
permutation_test Man page
permutation_test-class Man page
permutation_test.boxplot Man page
permutation_test.boxplot-class Man page
permutation_test.hist Man page
permutation_test.hist-class Man page
permutation_test.scatter Man page
permutation_test.scatter-class Man page
permutation_test.violin Man page
permutation_test.violin-class Man page
permutation_test2 Man page
permutation_test2-class Man page
permute_sample_order Man page
permute_sample_order-class Man page
plsda_scores_plot Man page
plsda_scores_plot-class Man page
plsr_cook_dist Man page
plsr_cook_dist-class Man page
plsr_prediction_plot Man page
plsr_prediction_plot-class Man page
plsr_qq_plot Man page
plsr_qq_plot-class Man page
plsr_residual_hist Man page
plsr_residual_hist-class Man page
pqn_norm Man page
pqn_norm-class Man page
pqn_norm.hist Man page
pqn_norm.hist-class Man page
prob Source code
prop_na Man page
prop_na-class Man page
r_squared Man page
r_squared-class Man page
rsd_filter Man page
rsd_filter-class Man page
rsd_filter.hist Man page
rsd_filter.hist-class Man page
run Man page
run,bootstrap,dataset,metric-method Man page
run,forward_selection_byrank,dataset,metric-method Man page
run,grid_search_1d,dataset,metric-method Man page
run,kfold_xval,dataset,metric-method Man page
run,permutation_test,dataset,metric-method Man page
run,permutation_test2,dataset,metric-method Man page
run,permute_sample_order,dataset,metric-method Man page
sb_corr Man page
sb_corr-class Man page
sbcms_dataset Man page Source code
scale_colour_Publication Source code
scale_fill_Publication Source code
set_scale Source code
split_data Man page
split_data-class Man page
structToolbox Man page
structToolbox-package Man page
tSNE Man page
tSNE-class Man page
tSNE_scatter Man page
tSNE_scatter-class Man page
theme_Publication Source code
ttest Man page
ttest-class Man page
uncenter_colmeans Source code
vec_norm Man page
vec_norm-class Man page
vips Source code Source code
wilcox_p_hist Man page
wilcox_p_hist-class Man page
wilcox_test Man page
wilcox_test-class Man page
computational-metabolomics/structtoolbox documentation built on Nov. 15, 2019, 3:20 p.m.