assignColours: Assigns colours to samples in groups
In crukci-bioinformatics/qPLEXanalyzer: Tools for quantitative proteomics data analysis
View source: R/assignColours.R
assignColours R Documentation
Assigns colours to samples in groups
Description
Assigns colours to samples in groups for plotting
Usage
assignColours(MSnSetObj, colourBy = "SampleGroup")
Arguments
MSnSetObj
MSnSet; an object of class MSnSet
colourBy
character: column name from pData(MSnSetObj) to use for
coloring samples
Value
A character vector of colors for samples.
Examples
data(human_anno)
data(exp3_OHT_ESR1)
MSnSet_data <- convertToMSnset(exp3_OHT_ESR1$intensities_qPLEX1,
metadata=exp3_OHT_ESR1$metadata_qPLEX1,
indExpData=c(7:16), Sequences=2, Accessions=6)
sampleColours <- assignColours(MSnSet_data)
crukci-bioinformatics/qPLEXanalyzer documentation built on Oct. 23, 2023, 2:27 a.m.
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View source: R/assignColours.R
| assignColours | R Documentation |
Assigns colours to samples in groups
Description
Assigns colours to samples in groups for plotting
Usage
assignColours(MSnSetObj, colourBy = "SampleGroup")
Arguments
MSnSetObj |
MSnSet; an object of class MSnSet |
colourBy |
character: column name from pData(MSnSetObj) to use for coloring samples |
Value
A character vector of colors for samples.
Examples
data(human_anno)
data(exp3_OHT_ESR1)
MSnSet_data <- convertToMSnset(exp3_OHT_ESR1$intensities_qPLEX1,
metadata=exp3_OHT_ESR1$metadata_qPLEX1,
indExpData=c(7:16), Sequences=2, Accessions=6)
sampleColours <- assignColours(MSnSet_data)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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