hmmpick: Pick the ChromHMM model that is most well-defined
In csiu/hmmpickr: Pick a ChromHMM model

Description Usage Arguments Format See Also Examples

View source: R/hmmpick.R

Pick the ChromHMM model that is most well-defined

1	hmmpick(model_files, full_path = FALSE)

`model_files`	A list of ChromHMM models
`full_path`	Boolean; TRUE to return the full model path in the output, or FALSE to return only the model basename.

Returns a list sorted by ascending homogeneity cost. The models in model_files are used as the element names, and the model homogeneity cost are used as the element values.

homogeneity_cost for the calculation of the homogeneity cost.

model_files <- c(
  system.file("extdata", "model_roadmap15.txt",
              package="hmmpickr"),
  system.file("extdata", "model_roadmap18.txt",
              package="hmmpickr")
)
hmmpick(model_files)