hmmpick_cost_states: Helper to calculate the cost of the different states (used...

In csiu/hmmpickr: Pick a ChromHMM model

Description

Helper to calculate the cost of the different states (used for development)

Usage

hmmpick_cost_states(emissions_probs, scale = 1, returntotal = TRUE)

Arguments

emissions_probs	matrix (row=state; col=mark) containing the state emissions.
scale	float/int or list (length should be equal to the number of rows in emissions_probs) used to scale the states. By default, no scaling is applied.
returntotal	boolean; TRUE to return the average model cost or FALSE to return the list of state costs.

Examples

emissions_probs <- rbind(c(1, 0.5), c(1,0))
scale <- c(.95, .05)
hmmpickr:::hmmpick_cost_states(emissions_probs, scale)

csiu/hmmpickr documentation built on May 14, 2019, 12:24 p.m.