calculateFeatureCorrs: Calculate Spearman correlation between feature pairs

In csoneson/countsimQC: Compare Characteristic Features of Count Data Sets

Calculate Spearman correlation between feature pairs

Description

Calculate Spearman correlation between feature pairs

Usage

calculateFeatureCorrs(ddsList, maxNForCorr)

Arguments

ddsList	List of lists, with one element per data set. Each element is a list containing a DGEList and a DESeqDataSet, with calculated dispersions (e.g., output from calculateDispersionsddsList).
maxNForCorr	Maximal number of features to use for calculation of correlations. If the number of features in a data set exceeds maxNForCorr, maxNForCorr features will be randomly selected for calculation of correlations.

Value

A data frame with pairwise feature correlations for each data set

Author(s)

Charlotte Soneson

csoneson/countsimQC documentation built on Nov. 7, 2024, 3:15 a.m.