calculateSampleCorrs: Calculate Spearman correlation between sample pairs

In csoneson/countsimQC: Compare Characteristic Features of Count Data Sets

Calculate Spearman correlation between sample pairs

Description

Calculate Spearman correlation between sample pairs

Usage

calculateSampleCorrs(ddsList, maxNForCorr)

Arguments

ddsList	List of lists, with one element per data set. Each element is a list containing a DGEList and a DESeqDataSet, with calculated dispersions (e.g., output from calculateDispersionsddsList).
maxNForCorr	Maximal number of samples to use for correlation calculation. If the number of samples in a data set exceeds maxNForCorr, maxNForCorr samples will be randomly selected for calculation of correlations.

Value

A data frame with pairwise sample correlations for each data set

Author(s)

Charlotte Soneson

csoneson/countsimQC documentation built on Nov. 7, 2024, 3:15 a.m.