calculateSampleCorrs: Calculate Spearman correlation between sample pairs
In csoneson/countsimQC: Compare Characteristic Features of Count Data Sets
View source: R/calculateCorrelations.R
calculateSampleCorrs R Documentation
Calculate Spearman correlation between sample pairs
Description
Calculate Spearman correlation between sample pairs
Usage
calculateSampleCorrs(ddsList, maxNForCorr)
Arguments
ddsList
List of lists, with one element per data set. Each element is
a list containing a DGEList and a DESeqDataSet, with calculated
dispersions (e.g., output from calculateDispersionsddsList).
maxNForCorr
Maximal number of samples to use for correlation
calculation. If the number of samples in a data set exceeds
maxNForCorr, maxNForCorr samples will be randomly selected
for calculation of correlations.
Value
A data frame with pairwise sample correlations for each data set
Author(s)
Charlotte Soneson
csoneson/countsimQC documentation built on Oct. 29, 2023, 2:14 p.m.
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View source: R/calculateCorrelations.R
| calculateSampleCorrs | R Documentation |
Calculate Spearman correlation between sample pairs
Description
Calculate Spearman correlation between sample pairs
Usage
calculateSampleCorrs(ddsList, maxNForCorr)
Arguments
ddsList |
List of lists, with one element per data set. Each element is
a list containing a DGEList and a DESeqDataSet, with calculated
dispersions (e.g., output from |
maxNForCorr |
Maximal number of samples to use for correlation
calculation. If the number of samples in a data set exceeds
|
Value
A data frame with pairwise sample correlations for each data set
Author(s)
Charlotte Soneson
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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