generateIndividualPlots: Generate individual plots from countsimQCReport output

In csoneson/countsimQC: Compare Characteristic Features of Count Data Sets

Generate individual plots from countsimQCReport output

Description

Generate separate plots for all evaluation criteria using the collection of ggplot objects that can be saved when generating a countsimQC report (by setting savePlots = TRUE).

Usage

generateIndividualPlots(
  ggplotsRds,
  device = "png",
  outputDir = "./",
  nDatasets = 2
)

Arguments

ggplotsRds	The path to a .rds file generated by countsimQCReport by setting savePlots = TRUE, or the list of plots stored in this file.
device	One of "eps", "ps", "tex" (pictex), "pdf", "jpeg", "tiff", "png", "bmp", "svg" or "wmf" (windows only) (will be provided to the ggsave function from the ggplot2 package).
outputDir	The output directory where the plots should be generated.
nDatasets	The number of data sets that are compared in the figures. This is needed to set the size of the plots correctly.

Value

Nothing is returned, but plots are generated in the designated output directory.

Author(s)

Charlotte Soneson

Examples

## Load example data
data(countsimExample)
## Not run: 
## Generate report
countsimQCReport(countsimExample, outputDir = "./",
                 outputFile = "example.html", savePlots = TRUE)
## Generate individual plots
generateIndividualPlots("example_ggplots.rds", nDatasets = 3)

## End(Not run)

csoneson/countsimQC documentation built on Oct. 29, 2023, 2:14 p.m.