countsimExample: Example list with three count data sets

countsimExampleR Documentation

Example list with three count data sets

Description

A named list with three elements, each corresponding to a (real or simulated) count data set.

Usage

countsimExample

Format

A named list with three elements, each corresponding to a (real or simulated) count data set.

Details

The Original data set represents a subset of 10,000 genes and 11 cells from the GSE74596 single-cell RNA-seq data set, obtained from the conquer repository (http://imlspenticton.uzh.ch:3838/conquer/). The Sim1 and Sim2 data sets similarly represent subsets of scRNA-seq data sets simulated with two different simulation methods, using the real GSE74596 data set as the basis for parameter estimation. Each data set is represented as a DESeqDataSet object.

Value

A named list with three elements, each corresponding to a (real or simulated) count data set.


csoneson/countsimQC documentation built on Nov. 7, 2024, 3:15 a.m.